PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_BB8508CC6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 235aa    MW: 24674.8 Da    PI: 8.4898
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_BB8508CC6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.82e-39561551100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+Ca++C+++p f   +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++
  Traes_1DS_BB8508CC6.1  56 PCAACKLLRRRCAQECPFSPFFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVH 143
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                             l+aela++++e
  Traes_1DS_BB8508CC6.1 144 ALEAELAAVRAE 155
                            ********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.11455156IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3956153IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSTASEWQQD HEVGKKIKSE SAAEADRMMA AARRSSSLPA AGVGPGSTPS FNTMTPCAAC  60
KLLRRRCAQE CPFSPFFSPL EPHKFASVHK VFGASNVSKM LLEVHESQRG DAANSLVYEA  120
NLRLRDPVYG CMGAILTLQQ QVHALEAELA AVRAEILKHR YRPAAAASAV PNVPPSSHAS  180
QLLAAGGHRP AGSLGLAAPG AGPVPSASSS TTVYATASSS TDYSSITHEN VPYFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-405615911114LOB family transfactor Ramosa2.1
5ly0_B3e-405615911114LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958311e-117FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167556.11e-172LOB domain-containing protein 15-like
SwissprotQ9AT613e-69LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A3B5ZSF71e-171A0A3B5ZSF7_WHEAT; Uncharacterized protein
STRINGTraes_1DS_BB8508CC6.11e-172(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.13e-56LOB domain-containing protein 13
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]