PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1DS_C1D7139D7.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YB

Protein Properties

Length: 95aa MW: 11202.6 Da PI: 9.2539

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1DS_C1D7139D7.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	69	8.3e-22	47	94	44	93
NF-YB 44 sfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 f++sea dkcqrekrk in ddllwa+atlGfe+y+epl yl+kyre+ Traes_1DS_C1D7139D7.1 47 CFIASEARDKCQREKRKIINVDDLLWAMATLGFEEYIEPL--YLQKYREI 94 69***********************************8..9***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-17	48	93	IPR009072	Histone-fold
Pfam	PF00808	7.9E-6	48	74	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	6.16E-13	48	93	IPR009072	Histone-fold
PRINTS	PR00615	9.9E-5	57	75	No hit	No description
PRINTS	PR00615	9.9E-5	76	94	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
LRQRQGAGQV PTHRQHRQHH EEGHPGQRQD RQGRQGDLAG VRLGVHCFIA SEARDKCQRE 60 KRKIINVDDL LWAMATLGFE EYIEPLYLQK YREIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	6e-15	48	93	46	93	NF-YB
4awl_B	5e-15	48	93	47	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	5e-15	48	93	47	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009078	1e-102	BT009078.1 Triticum aestivum clone wkm1c.pk0002.d7:fis, full insert mRNA sequence.
GenBank	KM078735	1e-102	KM078735.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-A2) mRNA, complete cds.
GenBank	KM078736	1e-102	KM078736.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-B2) mRNA, complete cds.
GenBank	KM078737	1e-102	KM078737.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	P25209	5e-22	NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBL	A0A3B6LU14	1e-24	A0A3B6LU14_WHEAT; Uncharacterized protein
STRING	Traes_1DS_C1D7139D7.1	3e-64	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-23	nuclear factor Y, subunit B3

Publications ? help Back to Top
Li XY, et al. Evolutionary variation of the CCAAT-binding transcription factor NF-Y. Nucleic Acids Res., 1992. 20(5): p. 1087-91 [PMID:1549471] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]