PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_CCB0E5EE7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 163aa    MW: 17620 Da    PI: 8.9647
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_CCB0E5EE7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.64.8e-20117151135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C+ C+tt+Tp+WR+gp g++tLCnaCG++yrkk++
  Traes_1DS_CCB0E5EE7.1 117 CVECRTTTTPMWRSGPTGPRTLCNACGIRYRKKRR 151
                            ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-16111161IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-13113151No hitNo description
Gene3DG3DSA:3.30.50.101.3E-15115152IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.24E-13117152No hitNo description
PROSITE patternPS003440117142IPR000679Zinc finger, GATA-type
PfamPF003201.2E-17117151IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.664117147IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
FLLATDKETK NLLIQGLEDK EGTCTSTLPT CSLARDQKQN LQPSLGCYLF SSPPSPTTPS  60
PPTYASSREQ SKPSTTPSSP TKITAEQTTV PAPPMDSSHH KVIGVAPAAA EGGRMCCVEC  120
RTTTTPMWRS GPTGPRTLCN ACGIRYRKKR RQELGLDNKP QNQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2506741e-150AK250674.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf93f15, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A452Y1E71e-104A0A452Y1E7_AEGTS; Uncharacterized protein
STRINGTraes_1DS_CCB0E5EE7.11e-116(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.14e-19GATA transcription factor 23
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]