PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_CE96E8BF0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 190aa    MW: 20453.3 Da    PI: 7.7862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_CE96E8BF0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00043961123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C+++F++   L  H  +H
  Traes_1DS_CE96E8BF0.1 39 FVCKTCDRVFPSFQALGGHRASH 61
                           89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.28E-83799No hitNo description
PfamPF139121.7E-123863IPR007087Zinc finger, C2H2
PROSITE profilePS501579.393966IPR007087Zinc finger, C2H2
SMARTSM003550.123961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
PfamPF139122.0E-877101IPR007087Zinc finger, C2H2
SMARTSM003552.57799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MMKRFAFEER EMARVLLLVS REQAMPMPAR GDRAPERAFV CKTCDRVFPS FQALGGHRAS  60
HKKPRLDGDG DFKPKMHGCS ICGLEFAVGQ ALGGHMRRHR AMVAGGHGVT AVRPAITTNN  120
PNDNSNAVVV VGSAGGIKRG LWLDLNQPPC DDLCGSDVDH GECGHDAATA GYTFHQFLDA  180
GTMAVDCVGY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3717651e-123AK371765.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2141C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201498.11e-139zinc finger protein ZAT12-like
TrEMBLA0A3B5ZNA41e-138A0A3B5ZNA4_WHEAT; Uncharacterized protein
STRINGTraes_1DS_CE96E8BF0.11e-139(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.14e-26C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]