PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_054360BDD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 195aa    MW: 21215.3 Da    PI: 8.3093
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_054360BDD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP46.59.6e-159394878
                           SEEETTT--SS--S-STTTT-------S--- CS
                    SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
                           rfh l+efD++k+sCr+rLa+hn+rrrk+++
  Traes_2AL_054360BDD.1  9 RFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 39
                           9***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114113.699137IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-11940IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.105.0E-4924IPR004333Transcription factor, SBP-box
PfamPF031101.3E-7936IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
LTYSLSSFRF HLLDEFDDAK KSCRKRLADH NRRRRKSKPS EGDAADKRRA QASKAASAKG  60
KAAGSSSKST GTGDAMDIQV QLGSGDLSKD QDETMGHGEA VKEMQVDPKG KASMMQQQQQ  120
QQGHHGHGLH LQSQHGFPFP SSSAGSCFPQ SQAVSSTDNT SNIGHVQQEQ PALGFHQHSN  180
ILQLGQAMFD LDFDH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13148RRRRKSKPSEGDAADKRR
23237RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478830.0KF447883.1 Triticum aestivum squamosa promoter-binding-like protein 8 (SPL8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192131.11e-104squamosa promoter-binding-like protein 8
SwissprotQ01KM74e-66SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLA0A3B6B5U41e-129A0A3B6B5U4_WHEAT; Uncharacterized protein
TrEMBLA0A446LJ181e-129A0A446LJ18_TRITD; Uncharacterized protein
TrEMBLM7YMY21e-129M7YMY2_TRIUA; Squamosa promoter-binding-like protein 8
STRINGTraes_2AL_054360BDD.11e-140(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.14e-11squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]