PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_0B28B6DBE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 280aa    MW: 30060.4 Da    PI: 6.8642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_0B28B6DBE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.9e-18131180355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            ++GVr ++ +g+++AeIrd + +g   r++lg+f+++eeAa a+++a+ +++g
  Traes_2AL_0B28B6DBE.1 131 FRGVRKRP-WGKFAAEIRDSTRDG--VRVWLGTFDSPEEAALAYDQAAFAMRG 180
                            89******.**********43354..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-34130194IPR001471AP2/ERF domain
PROSITE profilePS5103222.339130188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-29130189IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21131189IPR016177DNA-binding domain
CDDcd000182.37E-25131190No hitNo description
PfamPF008477.2E-13131180IPR001471AP2/ERF domain
PRINTSPR003671.5E-9131142IPR001471AP2/ERF domain
PRINTSPR003671.5E-9154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSDPSSTASS YSTSPRLTTG VVNFLARRAM TTQNHHRAAA SLHSPGSSTG SADTAPWHYR  60
APATPPPLLP FDANDADEML LLDMLSQHQE DMHTDTATAP VPTTTAATAV KREVSEEVEA  120
KVAVGGSRRA FRGVRKRPWG KFAAEIRDST RDGVRVWLGT FDSPEEAALA YDQAAFAMRG  180
GAAVLNFPAD QVRRSLEGAG DDVCGRADGL SPVLALKRRH SMHRRASTTR KASRAVRTGR  240
PEGVMELEDL GAEYLEELLG ASDDMTTSAS SSWCSGHHSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-26123188772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699803e-43BT069980.1 Zea mays full-length cDNA clone ZM_BFb0349F03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155481.11e-161ethylene-responsive transcription factor 1B-like
TrEMBLA0A3B6B3Y80.0A0A3B6B3Y8_WHEAT; Uncharacterized protein
TrEMBLA0A446LBH20.0A0A446LBH2_TRITD; Uncharacterized protein
STRINGTraes_2AL_0B28B6DBE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-44ethylene response factor 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]