PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AL_0C169500B.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

M-type_MADS

Protein Properties

Length: 71aa MW: 8098.61 Da PI: 11.8271

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_0C169500B.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.2	4.5e-18	12	61	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50 rie+ ++r + f kRr+g+ KKAeEL LCda+v ++++s+ +g+++ ++ Traes_2AL_0C169500B.1 12 RIEDRRRRGICFRKRRAGLVKKAEELAMLCDADVGLLVISPfDGTFQRFA 61 8***************************************8678877775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	20.128	3	51	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.5E-17	3	63	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.88E-18	4	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-15	5	25	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.7E-20	12	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-15	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-15	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
MARQRGRVVL RRIEDRRRRG ICFRKRRAGL VKKAEELAML CDADVGLLVI SPFDGTFQRF 60 AAPATYVPVP P

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269\|PubMed:17951465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF469347	2e-59	KF469347.1 Brachypodium distachyon MADS-box transcription factor 53 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020147558.1	9e-31	MADS-box transcription factor 51-like isoform X1
Swissprot	Q9XJ61	9e-15	MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBL	A0A446L2E5	4e-38	A0A446L2E5_TRITD; Uncharacterized protein
STRING	Traes_2AL_0C169500B.1	3e-43	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15493	11	17

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]