PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_0EB34993E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 432aa    MW: 46270.7 Da    PI: 6.7475
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_0EB34993E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-19350384135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Traes_2AL_0EB34993E.1 350 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 384
                            *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.466344380IPR000679Zinc finger, GATA-type
SMARTSM004012.3E-18344398IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-14346407No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15348382IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.29E-14349406No hitNo description
PfamPF003203.0E-17350384IPR000679Zinc finger, GATA-type
PROSITE patternPS003440350375IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MLHQTLTPSS LAFSASASPD PLPFASNASP AAAAAAAATT LRPSAMPSYA HHHSSLDERM  60
DALKGSSRQE ETPDEAAAAA EAPAAWGFAE RDGFSVEDLL DLEEFCEPDK DGADEPEEAP  120
AADVKEEKLN DGPNQPVVSY ELAPPAPPAP EIVDLPAHDV EEELEWVSRI MDDSLSELPP  180
QPAPPASMMA SLAPRPPQHR LPQRHPLPQR HPQDGAYRAL PSMSDPMRTP TICALSTEAL  240
VPVKAKRSKR SRASGWSLSG PAPDSTSSSS TTTTSSCSSS ASFSPYFLLD TPHFGASELM  300
EEYNILPPPA KKSKHGKSSK QKAKKRGRKP KNLPAHPSSA TEATQSDRRC SHCGVQKTPQ  360
WRAGPEGAKT LCNACGVRYK SGRLLPEYRP ACSPTYVSSV HSNSHRKVLE MRRKKEDGPL  420
TVTATAPAVA SF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588220.0AK358822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1083M14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168016.10.0GATA transcription factor 5-like
TrEMBLA0A3B6B2U70.0A0A3B6B2U7_WHEAT; Uncharacterized protein
TrEMBLA0A446LAZ30.0A0A446LAZ3_TRITD; Uncharacterized protein
STRINGTraes_2AL_0EB34993E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA transcription factor 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]