PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_0F08552FB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 242aa    MW: 25873.8 Da    PI: 4.4919
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_0F08552FB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.5e-1957106255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr +  +g+Wv+eIr+p++   + r++lg+f+tae+Aa+a++ a+ +++g
  Traes_2AL_0F08552FB.1  57 TYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFDTAEMAARAHDVAAIAIKG 106
                            69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-2257115IPR016177DNA-binding domain
PfamPF008471.3E-1257106IPR001471AP2/ERF domain
SMARTSM003801.5E-3757120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-3357115IPR001471AP2/ERF domain
PROSITE profilePS5103223.16957114IPR001471AP2/ERF domain
CDDcd000182.12E-3358116No hitNo description
PRINTSPR003673.5E-115869IPR001471AP2/ERF domain
PRINTSPR003673.5E-118096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEHEQVLVVP QVSGNSSCCT CSNTSSGSLN ASSPSSDDSS AVAAGKKRPR RDLKHPTYRG  60
VRMRTWGKWV SEIREPRKKS RIWLGTFDTA EMAARAHDVA AIAIKGRAAH LNFPDLAHEL  120
PRAASAAPKD VQAAAALAAA TPSTLDALSP DSIAAKEQQE EAVEEVSEPA APEQASSPDC  180
SLIENAGPEY GGIGLDYAFL DVPDFLLEFG LASPEPPSYC GSPWDDVDDS LFFGEPLLLW  240
EH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-19551141272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278641e-114KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164544.11e-143ethylene-responsive transcription factor ERF039-like
TrEMBLA0A3B6B3S11e-176A0A3B6B3S1_WHEAT; Uncharacterized protein
TrEMBLA0A446LD151e-176A0A446LD15_TRITD; Uncharacterized protein
STRINGTraes_2AL_0F08552FB.11e-177(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-29ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]