PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AL_189D6889B.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 378aa MW: 38347.6 Da PI: 8.4721

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_189D6889B.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	79	140	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 keka++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Traes_2AL_189D6889B.1 79 KEKAINCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 140 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	76	137	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-33	81	137	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	83	137	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	85	121	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MDAAHWPQGL GLVKPMEEML MGAPSSNQQV QGSNPNPPAQ APSSAPGAGG PMRGGTPAMA 60 VAASGVGAGS TERRPRPQKE KAINCPRCNS TNTKFCYYNN YSLQQPRYFC KTCRRYWTEG 120 GSLRNVPVGG GSRKNKRSSS SSASASASAA ASATASVANS SMLGAAPNKN PKLAHEGAAH 180 DLNLAFPHHQ GGMQAQADYM AFPSLESSSM CNPGGGGMAA NGARAGGALS AMELLRSTGC 240 YMPLQMPMQM PGEYGAAGFS LGEFRAPAPP QSQSLLGFSL DAHGSVGGAS MAGYGSGAGM 300 QGMQDRSGRL LFAFEDLKPT ANSGAGGGES GGGSGAGVDG GDHQFEQGNK EQQGNGTPVG 360 QPDTPGFWNG MIGGGGTW

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MDAAHWPQGL GLVKPMEEML MGAPSSNQQV QGSNPNPPAQ APSSAPGAGG PMRGGTPAMA  60
VAASGVGAGS TERRPRPQKE KAINCPRCNS TNTKFCYYNN YSLQQPRYFC KTCRRYWTEG  120
GSLRNVPVGG GSRKNKRSSS SSASASASAA ASATASVANS SMLGAAPNKN PKLAHEGAAH  180
DLNLAFPHHQ GGMQAQADYM AFPSLESSSM CNPGGGGMAA NGARAGGALS AMELLRSTGC  240
YMPLQMPMQM PGEYGAAGFS LGEFRAPAPP QSQSLLGFSL DAHGSVGGAS MAGYGSGAGM  300
QGMQDRSGRL LFAFEDLKPT ANSGAGGGES GGGSGAGVDG GDHQFEQGNK EQQGNGTPVG  360
QPDTPGFWNG MIGGGGTW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	322	333	SGAGGGESGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372117	0.0	AK372117.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2146K16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020147698.1	0.0	dof zinc finger protein DOF4.6-like isoform X1
Swissprot	Q9SXG8	1e-126	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A3B6B3N1	0.0	A0A3B6B3N1_WHEAT; Uncharacterized protein
TrEMBL	A0A446LC14	0.0	A0A446LC14_TRITD; Uncharacterized protein
STRING	Traes_2AL_189D6889B.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	2e-42	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]