PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_1B22EA0AD.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 228aa    MW: 24617.7 Da    PI: 9.3596
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_1B22EA0AD.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS118.49e-371217175374
                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..........adhnses 252
                            +fef+ +v +  ed + e+++++p  +++Vnlv+   +  + s   +   ++ L  ++sl+P +v ++++             ++s+s
  Traes_2AL_1B22EA0AD.2   1 RFEFEGVVNNGPEDGRHERIKTDPAATVVVNLVFPAAQNARASSWDP---RSALAHIRSLNPSLVFLIDKVdegsgggkgaGRCGSAS 85 
                            59****9999************************8877764443333...58***************99742334444442233666* PP

                   GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre....rhetlekWrerleeaGFkpvplsekaakq 336
                            +l rf+  l+yy+a+f+sl++ lp++s eri +Er  lg ei+++ a   ++r +      +  + W+erle+aGF+ ++ls+++++q
  Traes_2AL_1B22EA0AD.2  86 LLPRFAANLRYYAAVFESLHECLPADSAERIAIERDHLGVEISDAMASLDRRRHAgdraADQMSRGWKERLESAGFEDARLSSRTVSQ 173
                            ***********************************************9999886511114455678********************** PP

                   GRAS 337 aklllrkvk.sdg...yrveee..sgslvlgWkdrpLvsvSaWr 374
                            aklll++ + + g   +rv e    +++ lgW+dr+L++++aWr
  Traes_2AL_1B22EA0AD.2 174 AKLLLKMKSgGCGgggFRVTEAgdGKAMALGWRDRALITATAWR 217
                            *****98664333344***9875245556**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.2881191IPR005202Transcription factor GRAS
PfamPF035143.1E-341217IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
RFEFEGVVNN GPEDGRHERI KTDPAATVVV NLVFPAAQNA RASSWDPRSA LAHIRSLNPS  60
LVFLIDKVDE GSGGGKGAGR CGSASLLPRF AANLRYYAAV FESLHECLPA DSAERIAIER  120
DHLGVEISDA MASLDRRRHA GDRAADQMSR GWKERLESAG FEDARLSSRT VSQAKLLLKM  180
KSGGCGGGGF RVTEAGDGKA MALGWRDRAL ITATAWRPCR RSVGKNEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-1385218258380Protein SCARECROW
5b3h_A4e-1385218257379Protein SCARECROW
5b3h_D4e-1385218257379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064582e-34AL606458.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence.
GenBankAP0149602e-34AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126122e-34CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173956.11e-146scarecrow-like protein 23
TrEMBLA0A3B6B0S61e-162A0A3B6B0S6_WHEAT; Uncharacterized protein
TrEMBLA0A446L4L41e-162A0A446L4L4_TRITD; Uncharacterized protein
STRINGTraes_2AL_1B22EA0AD.21e-165(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-16RGA-like 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]