PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_246006E77.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 499aa    MW: 53592.2 Da    PI: 7.8846
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_246006E77.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.82.5e-17113200186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                            +Wt+  +  L++a+ ++ e+l+rg+l++ +We+v++++     +    +s +qCk+k++nl+kryk + ++  +  s s s +p+++q
  Traes_2AL_246006E77.1 113 EWTDGAISSLLDAYMDRFEQLNRGNLRGRDWEDVAAAVtdgqGKSSGGKSVEQCKNKIDNLKKRYKVECQRIAG--SASASLWPWYKQ 198
                            5*************************************6655344446899***************88888777..467779****** PP

               trihelix  85 le 86 
                            +e
  Traes_2AL_246006E77.1 199 ME 200
                            *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.4E-20111202No hitNo description
Gene3DG3DSA:3.40.1160.101.7E-69254492IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.13E-50257492IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.329257493IPR015963Uridylate kinase, bacteria
CDDcd042547.75E-110260493No hitNo description
PfamPF006969.7E-16260472IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MASCDDDFGL LGDDAHPAPQ PSAQPAPPQQ AQGFCLVEAS AAGSGAGPGP FAPAREEGNH  60
SSDRGKASYH TKRRRDRPEE FSDGGEYCSY ISGGGRKGRG GGVSSDYRKD REEWTDGAIS  120
SLLDAYMDRF EQLNRGNLRG RDWEDVAAAV TDGQGKSSGG KSVEQCKNKI DNLKKRYKVE  180
CQRIAGSASA SLWPWYKQME QIMGNSPSPG TPKPPPATND DKPRQQQQHS NKRYPSSGTG  240
HATTMVPYSR STPLSNPKWK RVLLKIGGTA LAGEAPHNVD PKVIMLIARE VQVACRHGVE  300
VAILMGGRNV FCADSWVAAT GTDRASTHPI GMMAAVMNAV LLQASLEKIG VETRVQTALM  360
MQEVAEPYIR RRAIRHLEKG RVVIFGGTGA GTGNPLFTTD TAAALRASEI NADVVLKGVI  420
GDDEYGCPPR SNGSAPFEHI SFRELAARGT SKMDMTAITC CEENNIPVVI FNMLEPGNMS  480
RAICGDQVGT LVDQSGRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-612514921239Uridylate kinase
3ek5_B1e-612514921239Uridylate kinase
3ek5_C1e-612514921239Uridylate kinase
3ek5_D1e-612514921239Uridylate kinase
3ek5_E1e-612514921239Uridylate kinase
3ek5_F1e-612514921239Uridylate kinase
3ek6_A1e-612514921239Uridylate kinase
3ek6_B1e-612514921239Uridylate kinase
3ek6_C1e-612514921239Uridylate kinase
3ek6_D1e-612514921239Uridylate kinase
3ek6_E1e-612514921239Uridylate kinase
3ek6_F1e-612514921239Uridylate kinase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193101GGRKGRGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699350.0AK369935.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159183.10.0uncharacterized protein LOC109744472
TrEMBLA0A3B6B0B80.0A0A3B6B0B8_WHEAT; Uncharacterized protein
STRINGTraes_2AL_246006E77.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-153Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]