PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_2FE59A2DC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRF
Protein Properties Length: 155aa    MW: 16903.3 Da    PI: 10.8048
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_2FE59A2DC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.91e-2462106145
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                            ++ep rCrRtDGKkWRCsr v++g+k+CErH+hrgrsr rk++e+
  Traes_2AL_2FE59A2DC.1  62 EPEPDRCRRTDGKKWRCSRGVVPGHKYCERHVHRGRSRARKPVEA 106
                            699***************************************985 PP
2QLQ509e-18132637
                    QLQ  6 aQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                           +Q q+L++Q+l+y+y+aan+PvP +L+++i+k
  Traes_2AL_2FE59A2DC.1  1 MQRQELEHQVLIYRYFAANAPVPVHLVLPIWK 32
                           69*****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5166620.68132IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.1E-11231IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.67362106IPR014977WRC domain
PfamPF088797.6E-2163105IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MQRQELEHQV LIYRYFAANA PVPVHLVLPI WKSVAASSSA PQRFPSLAGL GSMCYDHRSS  60
MEPEPDRCRR TDGKKWRCSR GVVPGHKYCE RHVHRGRSRA RKPVEAAAAT SAVPIRAMHA  120
ADAQGATSAH AAPPQRLGFS SPAGVYLAHG TARAT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9763931e-101EU976393.1 Zea mays clone 881905 growth-regulating factor mRNA, complete cds.
GenBankKJ7278571e-101KJ727857.1 Zea mays clone pUT5948 GRF transcription factor (GRF9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188115.11e-109growth-regulating factor 12-like
RefseqXP_020197443.11e-109growth-regulating factor 12-like
SwissprotQ6AWX74e-70GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLA0A3B6B4411e-109A0A3B6B441_WHEAT; Uncharacterized protein
STRINGTraes_2AL_2FE59A2DC.11e-110(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.12e-34growth-regulating factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]