PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AL_39432DCB1.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 345aa MW: 39374.2 Da PI: 9.3139

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_39432DCB1.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.9	1.3e-25	202	251	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d++ yF+lpi++A++ L++++++LK++CRqyGI+RWPhRkiksl Traes_2AL_39432DCB1.2 202 ASITLADIAPYFHLPIREASRALKIGVSILKQKCRQYGIPRWPHRKIKSL 251 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	20.134	186	271	IPR003035	RWP-RK domain
Pfam	PF02042	9.0E-21	203	251	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MDAAAAAVTT LSALAVFAST LHQGAVRSVH GYRVVAMGGR CAWDRWVERE FAFSPTSCRE 60 VPLPAAAPRI LPVEWRGRPA YREGQVLGAW RCVLAFDSIA AVPLPPTPPP MLCPFRNPGL 120 VCVPSLYNDL YMVYQFQKFQ QAPELVKRDS DEKSTRLEAD DKTSDVEVKE ESGSDSDEDP 180 QSGEELPAHV ERRRRAKKQH IASITLADIA PYFHLPIREA SRALKIGVSI LKQKCRQYGI 240 PRWPHRKIKS LDSLISDLEF VMDDTDGDVV QKETRRQREK EREKEKEKEK EKQEAIQALA 300 KRKRLLESEK EIIQQKPALD LMAETKLFRE DVFKRRYRAK RLPGQ

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MDAAAAAVTT LSALAVFAST LHQGAVRSVH GYRVVAMGGR CAWDRWVERE FAFSPTSCRE  60
VPLPAAAPRI LPVEWRGRPA YREGQVLGAW RCVLAFDSIA AVPLPPTPPP MLCPFRNPGL  120
VCVPSLYNDL YMVYQFQKFQ QAPELVKRDS DEKSTRLEAD DKTSDVEVKE ESGSDSDEDP  180
QSGEELPAHV ERRRRAKKQH IASITLADIA PYFHLPIREA SRALKIGVSI LKQKCRQYGI  240
PRWPHRKIKS LDSLISDLEF VMDDTDGDVV QKETRRQREK EREKEKEKEK EKQEAIQALA  300
KRKRLLESEK EIIQQKPALD LMAETKLFRE DVFKRRYRAK RLPGQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372387	0.0	AK372387.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3001B21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158590.1	0.0	protein RKD5-like
TrEMBL	A0A3B6B4C3	0.0	A0A3B6B4C3_WHEAT; Uncharacterized protein
TrEMBL	A0A446LC70	0.0	A0A446LC70_TRITD; Uncharacterized protein
STRING	Traes_2AL_39432DCB1.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-42	RWP-RK domain-containing protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]