PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_45E6314EF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 290aa    MW: 30694.9 Da    PI: 6.0515
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_45E6314EF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-1998148155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Traes_2AL_45E6314EF.1  98 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 148
                            57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.21E-3198158No hitNo description
PfamPF008471.7E-1398148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-3399157IPR001471AP2/ERF domain
PROSITE profilePS5103224.19799156IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2299157IPR016177DNA-binding domain
SMARTSM003801.3E-3999162IPR001471AP2/ERF domain
PRINTSPR003676.8E-11100111IPR001471AP2/ERF domain
PRINTSPR003676.8E-11122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEADASHAPT TSSSSVSSST LSTSSSSSSL ATSALELPKS PKPKHPKKRK RAGSDREQDA  60
AANTNGVRGD ESSCCSTDED FAAASVKAAV PKSGFKHPSY RGVRRRSWGK WVSEIREPRK  120
KSRIWLGTFP TAEMAARAHD VAALAIKGRS AHLNFPELAH ELPRPDSTSP ADIQAAAAKA  180
AATAAVQCEA EPEHEHEPET PSSSSGAVSE TPEAAACAEA APADSGEVDN ALFDLPDLLL  240
DLRDGLFWSP VWPAALAAEE YDGGCCVGLS EPLLWAESFA RHDGLPRKRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1894156972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14049PKPKHPKKRK
24349KHPKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7859040.0AY785904.1 Triticum monococcum cultivar DV92 TmCBF7 (CBF7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164578.11e-124ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ71e-48ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A3B6B4470.0A0A3B6B447_WHEAT; Uncharacterized protein
TrEMBLA0A446LD490.0A0A446LD49_TRITD; Uncharacterized protein
STRINGTraes_2AL_45E6314EF.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]