PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_4F71A8FB4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 226aa    MW: 24820.7 Da    PI: 10.6702
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_4F71A8FB4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72e-134693355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                           ++h + ErrRR+++N+ f  L++l+P+        K++Ka+iL +++ Y+++L+
  Traes_2AL_4F71A8FB4.1 46 KNHVISERRRREKLNEMFLILKSLVPSiH------KVDKASILAETIAYLRELE 93
                           6899***********************66......****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.2724392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-1844103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-114693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-134697No hitNo description
Gene3DG3DSA:4.10.280.105.3E-1847104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-154998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MALGRRRGCA GHRESQKLLK KALAGGAWAN NGDDGTARAQ ESTNTKNHVI SERRRREKLN  60
EMFLILKSLV PSIHKVDKAS ILAETIAYLR ELEQKVEELE SNKAAGTTVV RKRHEVGGKK  120
VLAGSKRKAS ELGGEDTPLP KDGPSNIVNV TVTDKEVLLE VQCRWKELLM TQVFDAIKSL  180
RLDVLSVRAS TPDGLLALKI RAQFAGPGAV EPGMISEALQ KAIRRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1347103864Transcription factor MYC2
5gnj_B7e-1347103864Transcription factor MYC2
5gnj_E7e-1347103864Transcription factor MYC2
5gnj_F7e-1347103864Transcription factor MYC2
5gnj_G7e-1347103864Transcription factor MYC2
5gnj_I7e-1347103864Transcription factor MYC2
5gnj_M7e-1347103864Transcription factor MYC2
5gnj_N7e-1347103864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156ERRRRE
25257RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0810300.0EF081030.1 Triticum urartu clone BAC 404H6 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177997.11e-132anthocyanin regulatory R-S protein-like
RefseqXP_020177998.11e-132anthocyanin regulatory R-S protein-like
SwissprotP130278e-81ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A446LCM61e-162A0A446LCM6_TRITD; Uncharacterized protein
STRINGTraes_2AL_4F71A8FB4.11e-163(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.37e-38bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  5. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]