PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_57BF37A86.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 355aa    MW: 38223.9 Da    PI: 7.6121
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_57BF37A86.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.66e-54131381128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeel+++yL+kkv++ ++ +  +++ +d++k+ePwdLp+ ++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgk
  Traes_2AL_57BF37A86.1  13 LPPGFRFHPTDEELITHYLAKKVADARFAA-LAVSVADLNKCEPWDLPSLARMGEKEWYFFCLKDRKYPTGLRTNRATESGYWKATGK 99 
                            79*************************999.569999***********8778899********************************* PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk++++ +++lvg+kktLvfy+grapkg k+ Wvmheyr+
  Traes_2AL_57BF37A86.1 100 DKDIFR-GKALVGMKKTLVFYTGRAPKGDKSGWVMHEYRI 138
                            ******.99*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-629172IPR003441NAC domain
PROSITE profilePS5100557.74813172IPR003441NAC domain
PfamPF023651.2E-2914138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEHGEQEQHA MDLPPGFRFH PTDEELITHY LAKKVADARF AALAVSVADL NKCEPWDLPS  60
LARMGEKEWY FFCLKDRKYP TGLRTNRATE SGYWKATGKD KDIFRGKALV GMKKTLVFYT  120
GRAPKGDKSG WVMHEYRINA KLHAASTSRG SLSGGRAASS RNEWVLCRVF KKSLLGGVVS  180
SAPASSAAKK SGVGTMEEIG SSVAAVTPLP PLLDMSGSGA SFVDPAAHVT CFSNNALEAG  240
QFFNPTATGG CATDTDHHGL ASSYSPLASF TQYGGQLHHG VSLSLVQLLE SSGYHRGLAD  300
DMAPCGNQQQ QPAACKGERE RLSASQDTGL TSDVNPEISS SFGQKFDHEP APWGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-521117215165NO APICAL MERISTEM PROTEIN
1ut4_B8e-521117215165NO APICAL MERISTEM PROTEIN
1ut7_A8e-521117215165NO APICAL MERISTEM PROTEIN
1ut7_B8e-521117215165NO APICAL MERISTEM PROTEIN
4dul_A8e-521117215165NAC domain-containing protein 19
4dul_B8e-521117215165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3639480.0AK363948.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2020E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168413.10.0NAC domain-containing protein 92-like
TrEMBLA0A3B6B2050.0A0A3B6B205_WHEAT; Uncharacterized protein
TrEMBLA0A446L6A50.0A0A446L6A5_TRITD; Uncharacterized protein
STRINGTraes_2AL_57BF37A86.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.12e-86NAC domain containing protein 80
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]