PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AL_71DE02042.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

YABBY

Protein Properties

Length: 187aa MW: 20314.1 Da PI: 8.7124

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_71DE02042.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	194.1	6.5e-60	1	187	8	167
YABBY 8 eqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaaeshldeslkee.................... 70 eq+Cyv+CnfC+tilav vP +slfk+v+vrCGhC++llsvnl++ ++l+ + + Traes_2AL_71DE02042.1 1 EQLCYVHCNFCDTILAVGVPCSSLFKTVAVRCGHCANLLSVNLRNLLlpataNQLPFSP--------Sllsptspasphglldemssf 80 79**************************************99876333333333333........233335556888988888888 PP YABBY 71 .....lleelkveeenlksnvekeesastsvssekl...senedeevprvpp...virPPekrqrvPsaynrfikeeiqrikasnPdi 147 l +++ + + + + +++++a ++ +++++ ++ ++e+p+ + + PekrqrvPsaynrfik+eiqrika+nPdi Traes_2AL_71DE02042.1 81 qapssL-LTDQASPNVSSITSSSNSCAINTPAMSMMpppEKPAQRETPQRKSaasGTKHPEKRQRVPSAYNRFIKDEIQRIKANNPDI 167 766632.233333333333444445555555566668885666666665544222689************************** PP YABBY 148 shreafsaaaknWahfPkih 167 +hreafsaaaknWahfP+ih Traes_2AL_71DE02042.1 168 THREAFSAAAKNWAHFPHIH 187 *****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.5E-66	1	187	IPR006780	YABBY protein
SuperFamily	SSF47095	1.01E-8	129	183	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.5E-5	136	184	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
EQLCYVHCNF CDTILAVGVP CSSLFKTVAV RCGHCANLLS VNLRNLLLPA TANQLPFSPS 60 LLSPTSPASP HGLLDEMSSF QAPSSLLTDQ ASPNVSSITS SSNSCAINTP AMSMMPPPEK 120 PAQRETPQRK SAASGTKHPE KRQRVPSAYN RFIKDEIQRI KANNPDITHR EAFSAAAKNW 180 AHFPHIH

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376350	0.0	AK376350.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3121I03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167170.1	1e-133	protein YABBY 5-like
Swissprot	Q01JG2	4e-97	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	4e-97	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A3B6B3N8	1e-134	A0A3B6B3N8_WHEAT; Uncharacterized protein
TrEMBL	A0A446LAT3	1e-134	A0A446LAT3_TRITD; Uncharacterized protein
STRING	Traes_2AL_71DE02042.1	1e-135	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	5e-42	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]