PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AL_73E4240F0.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Trihelix

Protein Properties

Length: 361aa MW: 39875.5 Da PI: 6.8945

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_73E4240F0.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.8	3e-28	44	131	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt...sessstcpyfdqle 86 W ++e+l Li++rrem+++++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk + ++++ + + s +++y+++++ Traes_2AL_73E4240F0.2 44 WVQDETLSLIALRREMDNHFNTSKSNKHLWEAISAKMREQGFDRSPTMCTDKWRNLLKEFKKARSHARSSAgagGNGSAKMAYYKEID 131 *****************************************************************99987433456677899998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-4	36	104	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.386	36	100	IPR017877	Myb-like domain
SMART	SM00717	6.6E-5	40	102	IPR001005	SANT/Myb domain
CDD	cd12203	3.55E-29	42	107	No hit	No description
Pfam	PF13837	2.1E-19	43	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MLLSGPQPPT PPLLLPESSG EDGGAHDHDS SSRASAPKKR AETWVQDETL SLIALRREMD 60 NHFNTSKSNK HLWEAISAKM REQGFDRSPT MCTDKWRNLL KEFKKARSHA RSSAGAGGNG 120 SAKMAYYKEI DDLLKRRGKA AASPAGSGGG GGAAKSPTPT SKIESYLQFA DKGFEDANIP 180 FGPVEASHPL ALTTADAVAT NGVNPWNWRD TSTNGGDNQG TYGGRVILVK WGDYTKRIGI 240 DGTAEAIKEA IKSAFGLRTR RAFWLEDEDE VVRSLDRDMP VGVYTLHLDN GITIKLCTFE 300 DADRMTVRTE DKTFYTEDDF RDFLSRRGWT LLREYSGYRV ADTLDDLRPG VIYQGMRSLV 360 D

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MLLSGPQPPT PPLLLPESSG EDGGAHDHDS SSRASAPKKR AETWVQDETL SLIALRREMD  60
NHFNTSKSNK HLWEAISAKM REQGFDRSPT MCTDKWRNLL KEFKKARSHA RSSAGAGGNG  120
SAKMAYYKEI DDLLKRRGKA AASPAGSGGG GGAAKSPTPT SKIESYLQFA DKGFEDANIP  180
FGPVEASHPL ALTTADAVAT NGVNPWNWRD TSTNGGDNQG TYGGRVILVK WGDYTKRIGI  240
DGTAEAIKEA IKSAFGLRTR RAFWLEDEDE VVRSLDRDMP VGVYTLHLDN GITIKLCTFE  300
DADRMTVRTE DKTFYTEDDF RDFLSRRGWT LLREYSGYRV ADTLDDLRPG VIYQGMRSLV  360
D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-43	38	129	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00666	PBM	Transfer from GSVIVG01007522001	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951956	0.0	JF951956.1 Aegilops tauschii clone TaMYB36 MYB-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020195254.1	0.0	trihelix transcription factor GT-4-like
Swissprot	Q9FX53	1e-147	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A3B6B0T6	0.0	A0A3B6B0T6_WHEAT; Uncharacterized protein
TrEMBL	A0A446L7H1	0.0	A0A446L7H1_TRITD; Uncharacterized protein
STRING	Traes_2AL_73E4240F0.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-130	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]