PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_7FEF10153.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 166aa    MW: 18097.8 Da    PI: 9.9874
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_7FEF10153.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.4e-06931331554
                            HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            +i + +++L+ llP+ + ++++ + s a +L++++ YI+sL
  Traes_2AL_7FEF10153.1  93 QISELLSKLQALLPEsQARNGAHRGSAARVLQETCSYIRSL 133
                            7999***********666888888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.78878133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-792149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-793137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
LSPRLQLPLT CTKRQATLAP QLLATICLAK LYPTPASCVW ALPGLSYSST RTCIRYPLRA  60
VTRERAVESS MSSSSRRSRT RRTGSSPSIS EEQISELLSK LQALLPESQA RNGAHRGSAA  120
RVLQETCSYI RSLHREVDDL SETLAALLAS DAVTAEQAAV IRSLLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732871e-132AK373287.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026B22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3B6B7015e-58A0A3B6B701_WHEAT; Uncharacterized protein
STRINGTraes_2AL_7FEF10153.11e-112(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122932837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-17bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]