PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_8417C5F8B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 244aa    MW: 26660.8 Da    PI: 6.343
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_8417C5F8B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.1e-103778346
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           +WT  E +ll+++v ++G + W++I +++  ++   +c+ r+ +
  Traes_2AL_8417C5F8B.1 37 AWTDAETLLLLEGVLKHGDD-WDLITQHVR-TKNKTECIARLIQ 78
                           8*****************88.*********.888888*999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.01E-93175IPR009057Homeodomain-like
PROSITE profilePS5129319.273384IPR017884SANT domain
SMARTSM007171.7E-63482IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-63575IPR009057Homeodomain-like
CDDcd001676.19E-73775No hitNo description
PfamPF002497.9E-93778IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
GFKVCSTCCK TNSAKKEEAN KCSIVKKESS DNHASSAWTD AETLLLLEGV LKHGDDWDLI  60
TQHVRTKNKT ECIARLIQLP FGEHMLGNIN NGKSDSRFHT NQTTDGKTNH FIVKEASSQS  120
ADMVDGMQID GEEDGADKLV EDHPSKRRRL CSSIDVTSSL MEQLALLTTA VSPDVVAAAA  180
AASIKALGNE NPQAKKAFHL SEKEYQVKSF SSNHVQESDC NVGNKEAEMH GQTVPGRPNF  240
LLTF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145149KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155759.11e-159SWI/SNF complex subunit SWI3A-like
TrEMBLA0A3B6C8J81e-163A0A3B6C8J8_WHEAT; Uncharacterized protein
TrEMBLA0A446MG161e-163A0A446MG16_TRITD; Uncharacterized protein
TrEMBLA0A453C7P51e-164A0A453C7P5_AEGTS; Uncharacterized protein
STRINGTraes_2AL_8417C5F8B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP289434
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]