PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_89543BA1A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 654aa    MW: 72518.7 Da    PI: 6.1392
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_89543BA1A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.4e-23124225199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++ +++aee+      ++++++ ++l+ +d++g  W +++i+r++++r++lt+GW+ Fv++++L +gD ++F
  Traes_2AL_89543BA1A.1 124 FCKTLTASDTSTHGGFSVLRRHAEEClppldmSQNPPC-QELVAKDLHGTDWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIF 210
                            99*****************************7556666.59*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               + +++el+v+v+r+
  Traes_2AL_89543BA1A.1 211 L--RGENGELRVGVRRH 225
                            *..449999******96 PP
2Auxin_resp98.78.3e-33250335183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                            a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k+++svGmRfkm+fe++++ err+sGt++g+     ++++ W +S W+sLk
  Traes_2AL_89543BA1A.1 250 ASHAISTGTLFSVFYKPRTSQSEFVVSVNKYLEAKKQNISVGMRFKMKFEGDEALERRFSGTIIGIGStptVSTSLWADSDWKSLK 335
                            789**************************************************************98622256678********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-44113253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-41122239IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-21122224No hitNo description
PROSITE profilePS5086311.617124226IPR003340B3 DNA binding domain
PfamPF023622.8E-21124225IPR003340B3 DNA binding domain
SMARTSM010194.0E-21124226IPR003340B3 DNA binding domain
PfamPF065072.6E-31250335IPR010525Auxin response factor
PROSITE profilePS5174523.4532625IPR000270PB1 domain
SuperFamilySSF542772.16E-10535611No hitNo description
PfamPF023097.1E-8579623IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MAMANPSAAG APGICSDALF RELWHACAGP LITVPRQGER VYYFPQGHME QLEASTNQQL  60
DQYLPMFNLP SKILCSVVNV ELRTEADSDE VYAQIMLQPE ANQGELTSLG PEPKELEKGT  120
IHSFCKTLTA SDTSTHGGFS VLRRHAEECL PPLDMSQNPP CQELVAKDLH GTDWHFRHIF  180
RGQPRRHLLT TGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRHMRQVN NMPSSVISSH  240
SMHLGVLATA SHAISTGTLF SVFYKPRTSQ SEFVVSVNKY LEAKKQNISV GMRFKMKFEG  300
DEALERRFSG TIIGIGSTPT VSTSLWADSD WKSLKVQWDE PSSILRPDRV SPWELEPLDA  360
ANPQPPQPPL RNKRPRLPAS PSVVPELAPK FGLWKSPAEP SQTLSFSEPQ QARGLFTNSR  420
FSSSSNVAFN QFYWPARESR EDSYAGSTNK VTVERKLEPA AGGCRLFGIE IRSAVEETQP  480
VLTVSGDGYD QTAASVDVDS GELSQPSNMN NSGAQAASSE RALLETQSRQ VRSCTKVIMT  540
GMAVGRAVDL TKLYGYVDLH RKLEEMFDIQ GELCSTLKKW QVVYADEEDD MMLVGDDPWD  600
EFCNMAKRIY IYTYEEAKQL APKAAKLSRV NSSHESATPQ SGSDYPASFA NADC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.013601357Auxin response factor 1
4ldw_A0.013601357Auxin response factor 1
4ldw_B0.013601357Auxin response factor 1
4ldx_A0.013601357Auxin response factor 1
4ldx_B0.013601357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516660.0AK251666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf119n03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162394.10.0auxin response factor 9
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLA0A3B6B1170.0A0A3B6B117_WHEAT; Auxin response factor
TrEMBLA0A446L4X20.0A0A446L4X2_TRITD; Auxin response factor
STRINGTraes_2AL_89543BA1A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]