PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_8EE7F34F6.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 319aa    MW: 35366.2 Da    PI: 6.2416
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_8EE7F34F6.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35.2e-52151571128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvka...eekewyfFskrdkkyatg 71 
                            +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++              +  a   +++ewyfFs +d+ky++g
  Traes_2AL_8EE7F34F6.2  15 VPPGFRFHPTEEELVGYYLARKVAAQKIDL-DIIQEVDLYRIEPWDLQErcgggrggrgarqvA--AedeQSSEWYFFSFKDRKYPSG 99 
                            69****************************.99**************95689999999988542..3222445*************** PP

                    NAM  72 krknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +r+nrat++g+Wkatg+dk+v+s+ ++ ++g++ktLvfy+grap+g+ktdW++heyrl
  Traes_2AL_8EE7F34F6.2 100 TRTNRATAAGFWKATGRDKPVTSSrSHGVIGMRKTLVFYRGRAPNGRKTDWIIHEYRL 157
                            **********************9856678***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-566178IPR003441NAC domain
PROSITE profilePS5100556.6515178IPR003441NAC domain
PfamPF023658.3E-2716157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MLAMEQHHQQ EESCVPPGFR FHPTEEELVG YYLARKVAAQ KIDLDIIQEV DLYRIEPWDL  60
QERCGGGRGG RGARQVAAED EQSSEWYFFS FKDRKYPSGT RTNRATAAGF WKATGRDKPV  120
TSSRSHGVIG MRKTLVFYRG RAPNGRKTDW IIHEYRLQTN EHAPTQEEGW VVCRAFQKPT  180
PNQRPSYIFP AYAATPGLGS YYDARPWLHG RGDDLPYLQS AAGATGAGGL GFPGFPGQGI  240
QYSDDVLESK QSLFNNIPQL IESPPTTTAV AGGGDAGYDI VQQGQGAAGM DWNFLDSLLS  300
TSQLHEYSAT AASQLHLEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4821781168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3677890.0AK367789.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184116.10.0NAC domain-containing protein 30-like
RefseqXP_020184117.10.0NAC domain-containing protein 30-like
TrEMBLA0A3B6B8090.0A0A3B6B809_WHEAT; Uncharacterized protein
STRINGTraes_2AL_8EE7F34F6.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.17e-84vascular related NAC-domain protein 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]