PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AL_B05A4E316.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

TCP

Protein Properties

Length: 205aa MW: 21787.7 Da PI: 10.1046

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_B05A4E316.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.2	6e-34	53	139	2	83
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec....eaesssssas 83 ag+ + +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++++a +c ++++ s ++ Traes_2AL_B05A4E316.1 53 AGAAKGAKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTTPAvFSCssapSTAAVSLLGK 139 56667789********************************************************88888544432221122222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.3E-30	58	147	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.413	59	113	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MASRDAATFQ LYRPMAMPTA TPMSQTMAMP GFSSAEAADD AVVAVPVPAP RKAGAAKGAK 60 DRHSKVNGRG RRVRMPIVCA ARVFQLTREL GLKSDGQTVE WLLRQAEPSI LAATGSGTTP 120 AVFSCSSAPS TAAVSLLGKR PREEHEHEAA PSFWEALQAR PVPWGLSPSL EAQAYASSVA 180 QGHHHHLNLL SALSGASRRP EEESR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359408	0.0	AK359408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096D21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178782.1	1e-146	transcription factor TCP7-like
TrEMBL	A0A3B6B207	1e-146	A0A3B6B207_WHEAT; Uncharacterized protein
STRING	Traes_2AL_B05A4E316.1	1e-146	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	1e-36	TCP family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]