PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_B518C11E4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 151aa    MW: 17403.1 Da    PI: 10.2254
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_B518C11E4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-15599394
                           EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3  3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                           k+lt+sdv++ gr+vlpk+ ae++   + ++ +  l++ed +   +W++k++y  ++ks++yvl+  + eF k ++L + D+++++  ++
  Traes_2AL_B518C11E4.1  5 KELTNSDVGNIGRIVLPKRDAEANlpALLERDGLILKMEDmRLPVTWNFKFRYwpNNKSRMYVLE-STGEFTKHHNLATQDTFIIY--KS 91
                           889***********************777778888999995555*********89999999**99.9******************9..55 PP

                           .SEE..EE CS
                     B3 88 .sefelvv 94
                            +++++ v
  Traes_2AL_B518C11E4.1 92 lESGKFIV 99
                           57776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.0E-73103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-213105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-16497IPR015300DNA-binding pseudobarrel domain
CDDcd100172.73E-185100No hitNo description
PfamPF023624.8E-12599IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MVVWKELTNS DVGNIGRIVL PKRDAEANLP ALLERDGLIL KMEDMRLPVT WNFKFRYWPN  60
NKSRMYVLES TGEFTKHHNL ATQDTFIIYK SLESGKFIVR GEKVTGQCAT LICPECKEQG  120
RINNRQCGFT RNLHARKRRS MPAVFTSAPS Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-3159015100B3 domain-containing transcription factor LEC2
6j9c_D1e-3159015100B3 domain-containing transcription factor LEC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192022.11e-94putative B3 domain-containing protein Os04g0676650 isoform X1
RefseqXP_020192023.11e-94putative B3 domain-containing protein Os04g0676650 isoform X2
SwissprotQ7XKC46e-55Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLA0A3B6B8P61e-107A0A3B6B8P6_WHEAT; Uncharacterized protein
TrEMBLA0A446LMU61e-107A0A446LMU6_TRITD; Uncharacterized protein
STRINGTraes_2AL_B518C11E4.11e-111(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-34B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]