PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_BC4CD296F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 219aa    MW: 25580.2 Da    PI: 7.5536
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_BC4CD296F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.83.9e-2785134352
                 RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            ++i+led+ +yF+lpi++A+++L+++l++LK++CRqyGI+RWPhRk+ksl
  Traes_2AL_BC4CD296F.1  85 ASITLEDITQYFHLPIREASRTLKIGLSILKKKCRQYGIPRWPHRKLKSL 134
                            68**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151919.46369157IPR003035RWP-RK domain
PfamPF020422.6E-2286134IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MNPRLMCVPS LYNDLTKVFQ FQKVEEKVPG LVQCDSDEKL TTSDAKDRVS VKQEAGSDTD  60
EPPQFGEDLL APAEKQRRAH REYIASITLE DITQYFHLPI REASRTLKIG LSILKKKCRQ  120
YGIPRWPHRK LKSLDSLIHD LEFVIDDETE RDGVKQEDHM QDEKENQDAI EALAKRKRML  180
ETEKATIQQK PTLDLMAETK QFRQYVFKRK YRAKTLVSE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738350.0AK373835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3045A19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158589.11e-157protein RKD5-like
TrEMBLA0A3B6B3181e-157A0A3B6B318_WHEAT; Uncharacterized protein
STRINGTraes_2AL_BC4CD296F.11e-161(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-39RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]