PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_BF4D53AA5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WOX
Protein Properties Length: 194aa    MW: 21066.8 Da    PI: 9.7063
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_BF4D53AA5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-2053112357
                            --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                            +R+++++eq+++Le+l++   r+p+ +++e+++++l    +++ ++V++WFqN++a+e++
  Traes_2AL_BF4D53AA5.1  53 TRWNPSAEQIKVLEALYRGgMRTPNSAQIERITEELgrhgRIEGKNVFYWFQNHKARERQ 112
                            8*****************99**************************************97 PP
2Wus_type_Homeobox115.42.8e-3752114365
      Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                            +tRW+P++eQik+Le+ly+ G+rtPn+++i+rit+eL ++G+ie+kNVfyWFQN+kaRerqkq
  Traes_2AL_BF4D53AA5.1  52 TTRWNPSAEQIKVLEALYRGGMRTPNSAQIERITEELGRHGRIEGKNVFYWFQNHKARERQKQ 114
                            69***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.3E-850117IPR001356Homeobox domain
SuperFamilySSF466893.29E-1352118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-853112IPR009057Homeodomain-like
CDDcd000861.02E-653114No hitNo description
PfamPF000466.2E-1853112IPR001356Homeobox domain
PROSITE profilePS5007110.15558113IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MPPAAGAQDL PPGPAEEARR AAGRPRPRVR NATKLLCCTV RNHTVQVPVG GTTRWNPSAE  60
QIKVLEALYR GGMRTPNSAQ IERITEELGR HGRIEGKNVF YWFQNHKARE RQKQKRAALL  120
TLSTLDSSSL PATATKDGAG DKKEACDDAV TSCKRQCRTW GDGHGDAAAE VAAEGCTENV  180
TLELFPLRPQ GKAA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL4420071e-81AL442007.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete sequence.
GenBankAL6066351e-81AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence.
GenBankAL6066921e-81AL606692.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence.
GenBankAP0149601e-81AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-81CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankJF8361591e-81JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161616.11e-109WUSCHEL-related homeobox 4-like
SwissprotQ25AM28e-84WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV38e-84WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLA0A3B6B7231e-120A0A3B6B723_WHEAT; Uncharacterized protein
TrEMBLA0A446LJY61e-120A0A446LJY6_TRITD; Uncharacterized protein
STRINGTraes_2AL_BF4D53AA5.11e-141(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.11e-38WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]