PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_BFB0C6D4C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 183aa    MW: 20209.4 Da    PI: 4.9713
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_BFB0C6D4C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.91.9e-142401956
                           HHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox 19 Fek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Traes_2AL_BFB0C6D4C.1  2 FHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 40
                           666588999*****************************9 PP
2HD-ZIP_I/II103.22.2e-332781893
            HD-ZIP_I/II 18 Feeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                           F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++aL++ ydal+++ e+L++e+ +L+++l+e
  Traes_2AL_BFB0C6D4C.1  2 FHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDFAALRADYDALHSRVESLKHEKLALAAQLQE 78
                           888877********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.4E-4146IPR001356Homeobox domain
PROSITE profilePS5007114.236142IPR001356Homeobox domain
PfamPF000467.9E-12240IPR001356Homeobox domain
CDDcd000862.59E-12443No hitNo description
SuperFamilySSF466895.56E-13553IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-15547IPR009057Homeodomain-like
PRINTSPR000313.8E-71322IPR000047Helix-turn-helix motif
PROSITE patternPS0002701740IPR017970Homeobox, conserved site
PRINTSPR000313.8E-72238IPR000047Helix-turn-helix motif
PfamPF021832.8E-154283IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MFHAHHAKLE PREKAELARE LGLQPRQVAI WFQNKRARWR SKQLEHDFAA LRADYDALHS  60
RVESLKHEKL ALAAQLQELS ERLRERDGGG GGAATATASS SSCNGGGREL DDDKRNVVDV  120
EPPESCVLGG TACGTPADVS ASVESECDDH LHYDGAVFPE SFCATPELWE PWPWPPVEWN  180
AVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2243760.0KT224376.1 Triticum aestivum cultivar RAC875 HDZipI-5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200397.11e-111homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK08e-79HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ58e-79HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A3B6B1X81e-131A0A3B6B1X8_WHEAT; Uncharacterized protein
STRINGTraes_2AL_BFB0C6D4C.11e-132(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-24homeobox 7
Publications ? help Back to Top
  1. Harris JC, et al.
    Molecular interactions of the γ-clade homeodomain-leucine zipper class I transcription factors during the wheat response to water deficit.
    Plant Mol. Biol., 2016. 90(4-5): p. 435-52
    [PMID:26803501]