PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AL_C13CD3ECB.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 195aa MW: 20423.1 Da PI: 10.9892

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_C13CD3ECB.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.8	5.2e-13	30	74	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky Traes_2AL_C13CD3ECB.1 30 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 74 6***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.605	23	79	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-17	25	80	IPR009057	Homeodomain-like
SMART	SM00717	9.3E-11	27	77	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.3E-17	27	77	IPR006447	Myb domain, plants
CDD	cd00167	6.39E-11	30	75	No hit	No description
Pfam	PF00249	1.7E-11	30	74	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-11	30	73	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
GGKKSGGGGG GHGEKGSSKS AEQERRKGIA WTEDEHRLFL LGLEKYGKGD WRSISRNFVI 60 SRTPTQVASH AQKYFIRLNS MNRERRRSSI HDITSVNGEA SAAQGPITGT NGQAAVPGKS 120 PKQSPHQPGN LPPGVDAFGT TIGQPVGGPL VSAVGTPVTL PVAAPPHMGY AMHAPVPGTV 180 VPRAPMYPMP PPPSR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366932	0.0	AK366932.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2048J09.
GenBank	AK372619	0.0	AK372619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3007D08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020192024.1	1e-139	transcription factor SRM1-like
Swissprot	Q9FNN6	3e-67	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A1D5UKM6	1e-138	A0A1D5UKM6_WHEAT; Uncharacterized protein
TrEMBL	A0A3B6CIP8	1e-138	A0A3B6CIP8_WHEAT; Uncharacterized protein
TrEMBL	A0A446MX40	1e-138	A0A446MX40_TRITD; Uncharacterized protein
STRING	Traes_2AL_C13CD3ECB.1	1e-138	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6376	38	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-66	MYB family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]