PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_C81692E4F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 150aa    MW: 15739.6 Da    PI: 8.9121
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_C81692E4F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144163123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           + C +C++ F+++  L  H++ H
  Traes_2AL_C81692E4F.1 41 FACCYCPRKFRSSQALGGHQNAH 63
                           78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.33E-54067No hitNo description
PROSITE profilePS5015710.0554168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MGRGMGMGMG MGRGMDREDG LNLSLSLQRS PSSPPRFQAV FACCYCPRKF RSSQALGGHQ  60
NAHKVQRNLA RRGRDATTAL SLAAAGDQGK AAVDDDSAPL RPADPDAADA WGGGRVYPPH  120
RQQGSGAASS GAARGNEELA DEMIDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668269e-51BT066826.1 Zea mays full-length cDNA clone ZM_BFb0076P10 mRNA, complete cds.
GenBankEU9704079e-51EU970407.1 Zea mays clone 344595 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581274.21e-44uncharacterized protein LOC100830698
TrEMBLA0A3B6B1571e-103A0A3B6B157_WHEAT; Uncharacterized protein
TrEMBLA0A446L5601e-103A0A446L560_TRITD; Uncharacterized protein
STRINGTraes_2AL_C81692E4F.11e-104(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-13zinc-finger protein 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]