PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_CDA1C09AB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 56aa    MW: 6115.89 Da    PI: 7.1823
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_CDA1C09AB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.84.8e-112653128
                    NAM  1 lppGfrFhPtdeelvveyLkkkvegkkl 28
                           lppGfrF P+d+elv++yL+kkv++++ 
  Traes_2AL_CDA1C09AB.1 26 LPPGFRFYPSDQELVCHYLCKKVTNERA 53
                           79*********************99874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-112252IPR003441NAC domain
PROSITE profilePS5100514.1052656IPR003441NAC domain
PfamPF023652.6E-72750IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
AGQVGCVDGR TERAGGMGLR EIESTLPPGF RFYPSDQELV CHYLCKKVTN ERASQG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2484803e-51AK248480.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf7e16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168520.12e-20protein CUP-SHAPED COTYLEDON 1-like
TrEMBLA0A446LAI42e-20A0A446LAI4_TRITD; Uncharacterized protein
TrEMBLA0A446LAI82e-20A0A446LAI8_TRITD; Uncharacterized protein
STRINGTraes_2AL_CDA1C09AB.19e-35(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.25e-15NAC domain containing protein 74
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]