PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_CFCC2012F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 185aa    MW: 20495.2 Da    PI: 10.2189
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_CFCC2012F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07119165245
                            SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 
                            g WT e ++ + +a +    +     W++Ia  +  g+t+++++ ++ 
  Traes_2AL_CFCC2012F.1 119 GGWTREQEKAFENALATVDEEegeaMWDKIADAVE-GKTPEEVRRHYE 165
                            56*****************99**************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.097113168IPR017877Myb-like domain
SMARTSM007170.0015117170IPR001005SANT/Myb domain
PfamPF002491.3E-5119165IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-10120174IPR009057Homeodomain-like
CDDcd001673.91E-7121168No hitNo description
Gene3DG3DSA:1.10.10.601.2E-4121172IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
PQSLPRPRAA VKGKYLARPR GNKSSSGGGG RSPSFLRLLP FSLFAKPPIY SPRARSDTKS  60
ASSSPRPPLL IPPPQSVRPT DPRRRPASPA XXXXXXXXXX XXXXXXXXXX XXXXXXXXGG  120
WTREQEKAFE NALATVDEEE GEAMWDKIAD AVEGKTPEEV RRHYELLVED VDGIEAGRVP  180
LLVYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-151211811170RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669321e-93AK366932.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2048J09.
GenBankAK3726191e-93AK372619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3007D08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGTraes_2AL_CFCC2012F.11e-101(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-18RAD-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]