PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AL_D3B2C21A7.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 88aa MW: 9899.11 Da PI: 9.0995

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_D3B2C21A7.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	82.8	5e-26	13	71	2	60
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y +++d+e++++isw+e+g++fvv+ + ef++++Lpk FkhsnfaSFvRQLn+Y Traes_2AL_D3B2C21A7.1 13 FLTKTYAMVDDPETDDTISWNESGTAFVVWRRAEFERDLLPKNFKHSNFASFVRQLNTY 71 9********************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.4E-27	8	72	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.0E-21	9	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.62E-23	11	71	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	5.6E-15	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.0E-21	13	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.6E-15	51	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.6E-15	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MASPALGAGT PPFLTKTYAM VDDPETDDTI SWNESGTAFV VWRRAEFERD LLPKNFKHSN 60 FASFVRQLNT YVRSVSARPP LSGWFGRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1hks_A	1e-19	7	71	1	65	HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A	1e-19	7	71	1	65	HEAT-SHOCK TRANSCRIPTION FACTOR
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU953624	1e-116	EU953624.1 Zea mays clone 1440437 heat shock factor protein 4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020152813.1	1e-45	heat stress transcription factor B-2a-like
Swissprot	Q7XRX3	2e-36	HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBL	A0A446LBY4	2e-57	A0A446LBY4_TRITD; Uncharacterized protein
STRING	Traes_2AL_D3B2C21A7.1	4e-59	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	4e-29	heat shock factor 4

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Nakayama A, et al. Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice. BMC Plant Biol., 2013. 13: p. 150 [PMID:24093634]