PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_E5A9615E2.3
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 345aa    MW: 37025.3 Da    PI: 4.9231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_E5A9615E2.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-19157208256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t  eAa+a+++a+ +++g+
  Traes_2AL_E5A9615E2.3 157 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTSVEAARAYDRAAFRMRGA 208
                            8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-32156216IPR001471AP2/ERF domain
SMARTSM003801.6E-36157221IPR001471AP2/ERF domain
CDDcd000186.56E-30157216No hitNo description
PROSITE profilePS5103224.105157215IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-22157216IPR016177DNA-binding domain
PfamPF008474.7E-14157207IPR001471AP2/ERF domain
PRINTSPR003671.8E-13158169IPR001471AP2/ERF domain
PRINTSPR003671.8E-13197217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEFAGEVDDF ALDLIREHLL GGDGGVQATA NHDQAGPFCD DVTFPVLPPS AAEPQAYTQQ  60
PMFFPQQQQQ QQENQQMQAY MDLAHQYLNS CPAADVPETV FRAPEPVMIQ FGGEPSPVTA  120
PSSTLSISVP AKGSFAWAGT AAAAAPPAPA PVEDFRKYRG VRQRPWGKYA AEIRDPKRRG  180
SRVWLGTYDT SVEAARAYDR AAFRMRGAKA ILNFPNEVGT RGAELWAPPP PVPASQTAGA  240
TNKRKRSHED DRDVEVTGVV INKAPKNEAP SPSSAQVSWD TPSSMSRETA SSTVTSAATT  300
PEGGLPPTPS SSGWEQYWEA LLGGMPLLSP LSPHPALGFP QLTVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-26156220468ATERF1
3gcc_A4e-26156220468ATERF1
5wx9_A6e-261572171474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247KRKRSH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735750.0AK373575.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035F11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178351.10.0ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3B6B3G90.0A0A3B6B3G9_WHEAT; Uncharacterized protein
TrEMBLA0A446LD870.0A0A446LD87_TRITD; Uncharacterized protein
STRINGTraes_2AL_E5A9615E2.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-35ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]