PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_E8C400686.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 104aa    MW: 12029.7 Da    PI: 10.1084
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_E8C400686.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.6e-171761147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           rg+++ eE+ l++ +++ lG++ W+tIa ++  gRt++++k++w+++
  Traes_2AL_E8C400686.1 17 RGNFSDEEERLIITLHAGLGNK-WATIATHLE-GRTDNEIKNYWNTH 61
                           89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-10123IPR009057Homeodomain-like
PROSITE profilePS500903.903111IPR017877Myb-like domain
SuperFamilySSF466895.13E-21170IPR009057Homeodomain-like
PROSITE profilePS5129426.491266IPR017930Myb domain
SMARTSM007176.9E-151664IPR001005SANT/Myb domain
PfamPF002496.1E-151761IPR001005SANT/Myb domain
CDDcd001679.91E-111962No hitNo description
Gene3DG3DSA:1.10.10.603.4E-222463IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
KSCRLRWTNY LRPDIKRGNF SDEEERLIIT LHAGLGNKWA TIATHLEGRT DNEIKNYWNT  60
HIRKKLLRMG VDPVTHQQLP PDQSHHHLNA TSIAHHPGAL LWAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-1916643108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1569044e-80AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene).
GenBankBT0543984e-80BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds.
GenBankHQ8586914e-80HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169252.14e-67transcription factor MYB34-like
SwissprotQ9S9Z21e-39MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A3B6B4026e-71A0A3B6B402_WHEAT; Uncharacterized protein
TrEMBLA0A446LF956e-71A0A446LF95_TRITD; Uncharacterized protein
STRINGTraes_2AL_E8C400686.12e-72(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.11e-42myb domain protein 107
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]