PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_EF9549D16.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 227aa    MW: 25675.1 Da    PI: 8.6016
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_EF9549D16.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1976130256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  Traes_2AL_EF9549D16.1  76 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTK 130
                            788899***********************************************98 PP
2HD-ZIP_I/II126.11.5e-4076165191
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr
  Traes_2AL_EF9549D16.1  76 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR 163
                            69*************************************************************************************9 PP

            HD-ZIP_I/II  89 eel 91 
                             +l
  Traes_2AL_EF9549D16.1 164 -AL 165
                            .55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-1950133IPR009057Homeodomain-like
SuperFamilySSF466891.17E-1865133IPR009057Homeodomain-like
PROSITE profilePS5007117.36272132IPR001356Homeobox domain
SMARTSM003891.7E-1674136IPR001356Homeobox domain
CDDcd000864.09E-1576133No hitNo description
PfamPF000468.1E-1776130IPR001356Homeobox domain
PRINTSPR000314.0E-6103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000314.0E-6112128IPR000047Helix-turn-helix motif
PfamPF021832.0E-11132166IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.5E-25132176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009641Biological Processshade avoidance
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0010016Biological Processshoot system morphogenesis
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MMERAEDLGL SLSLSSSLAP RTHHVAMLLH APERRLLEMP LLPAKRVCEV SADEERSGQR  60
GGSDDEDGGC GMDGSRKKLR LSKDQSAVLE DSFREHPTLN PRQKAALAQQ LGLRSRQVEV  120
WFQNRRARTK LKQTEVDCEF LKRCCETLTE ENRRLQKEVQ ELRALKLVSP HHYMHMSPPT  180
TLTMCPSCER VSNNNNNNNN NSTAADRRNG VEGAICHRPI AVRPQQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480SRKKLRL
2124132RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749800.0EU974980.1 Zea mays clone 462177 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
GenBankKJ7283620.0KJ728362.1 Zea mays clone pUT6644 HB transcription factor (HB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164579.11e-122homeobox-leucine zipper protein HOX17-like
SwissprotQ0JB921e-108HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17
TrEMBLA0A3B6B3T11e-166A0A3B6B3T1_WHEAT; Uncharacterized protein
TrEMBLA0A446LD341e-166A0A446LD34_TRITD; Uncharacterized protein
STRINGTraes_2AL_EF9549D16.11e-167(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-75homeobox protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]