PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_FC6DD1383.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 211aa    MW: 22269.9 Da    PI: 10.4395
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_FC6DD1383.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-182474255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t  eAa+a+++a+  ++g
  Traes_2AL_FC6DD1383.1 24 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTSVEAARAYDRAAFGMRG 74
                           8********.**********96554..**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.4E-322383IPR001471AP2/ERF domain
PROSITE profilePS5103223.6442482IPR001471AP2/ERF domain
CDDcd000185.24E-282483No hitNo description
PfamPF008471.8E-132474IPR001471AP2/ERF domain
SMARTSM003801.3E-352488IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-222483IPR016177DNA-binding domain
PRINTSPR003671.9E-102536IPR001471AP2/ERF domain
PRINTSPR003671.9E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
GTFRWVGTAA AAAPAPAPVE DLRKYRGVRQ RPWGKYAAEI RDPKRRGSRV WLGTYDTSVE  60
AARAYDRAAF GMRGAKAILN FPNEVGTRGA ELWAPPPSGP ASQTAGATNK RKRSQDEDAD  120
VEVTGVVINK AVKAEAPSPS SARVSWDTPS SVSRGTASST VTSVATTSEG GFPRTPSSSG  180
LEYWEALMGG MPLLSPLSPH PALGFPQLSV S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2724841474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735750.0AK373575.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035F11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151127.11e-123ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3B6B4S71e-146A0A3B6B4S7_WHEAT; Uncharacterized protein
TrEMBLA0A446LD761e-146A0A446LD76_TRITD; Uncharacterized protein
STRINGTraes_2AL_FC6DD1383.11e-148(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-34ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]