PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AS_1683BEFD0.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 907aa MW: 99800.8 Da PI: 7.2879

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AS_1683BEFD0.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.3	9.3e-22	120	221	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkek.dgk 75 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk ++ + + +rtgC a+l++k+ + Traes_2AS_1683BEFD0.1 120 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdetnatdvtvaASPPPPRCPDSRTGCLASLTIKLLPsANA 206 6***************99997666.************99996666666655443344448899**********99899 PP FAR1 76 wevtkleleHnHela 90 ++vt+++ eHnH+la Traes_2AS_1683BEFD0.1 207 FRVTEFVAEHNHPLA 221 *************97 PP
2	FAR1	69.2	1e-21	267	366	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkw 76 fYn+YA++vGFsvr+s++k++ +g i++r fvCs+eg +++ k++ r + trtgC+a++++k + ++ Traes_2AS_1683BEFD0.1 267 FYNRYAEHVGFSVRRSYKKRK--HGVIVSRIFVCSREGVSDRAKHDglasisanagggaPGPPRPGPPPTRTGCQARMVIKITPCRTY 352 9***********9976655..9**************99999999999987778888999*************** PP FAR1 77 evtkleleHnHela 90 +v+k+ eHnH+la Traes_2AS_1683BEFD0.1 353 RVAKFIAEHNHPLA 366 **********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-19	120	221	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.6E-18	267	366	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-21	455	548	IPR018289	MULE transposase domain
Pfam	PF04434	7.8E-6	723	769	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.076	723	770	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-6	745	772	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 907 aa Download sequence Send to blast
MALINPSTTH IYPQPPPPQP IHPTSSSSSG CSPPSFLQTL AQTLMSTTAH PPASLSGDSS 60 PTTSGSSSPS SSAAVAGSEE PALLGQATST STPSAAGDDA AVPSSPQMGM YFETEDDAYE 120 FYKAYAARLG FVVRKSNKSK NSRHTVTRRL FVCSKQGFRQ EPKKPQDETN ATDVTVAASP 180 PPPRCPDSRT GCLASLTIKL LPSANAFRVT EFVAEHNHPL ASAVSAVAMI PSSSSHHTIA 240 AAASLPDPRD GPRPEMHFET EDDAYAFYNR YAEHVGFSVR RSYKKRKHGV IVSRIFVCSR 300 EGVSDRAKHD GLASISANAG GGAPGPPRPG PPPTRTGCQA RMVIKITPCR TYRVAKFIAE 360 HNHPLANSET VHKLRSHKMR ARGHELGPGE LHRRKQGKGV QLGDAGAALE YLEGLQVGNP 420 SLYYAVGMAP DGNLAVNFFW ADAKSIIDFR SFGDVVCFDT TYGLNVYGRP FALFVGVDNH 480 KQLLVLGAAL LYDDGIQSLK WVFQAFDDAM RDRQPKTILI DERSECAIAA AEVWPGSNHC 540 TSVWHIYHSS KRHLKQVFES SKSFGNALSQ CLFDCEDEME FLSAWEKLIE KHDIGESEWL 600 SRLFLEKEKW ALPYRRTVFS ADILSTLRKD SMINELKREL NEQEDILLFF KRYETMLEEH 660 RSKKLQADVD GNQVTLPIPS LRMLKQSSNA YTPEAFKMFQ GEFEAYMNCM SFPCSVVGTV 720 SEYKITLDEK PSDAIVKFDA LDGLATCSCR KFESVGIQCC HVLKVLDLKN IKELPEQYIL 780 KRWRKDARSV RMGEEPNCGS SSIMRSSLDV RFSNMCRMVS LIASRAAKSE EAMSYIESQS 840 SVLLKHLDEI LQTSYPENGN HDVASSSQAI SFVGNHPDHT TQARAVADTA NGLTSLLGIS 900 AYPPVDN

Sequence ? help Back to Top

Protein Sequence Length: 907 aa Download sequence Send to blast

MALINPSTTH IYPQPPPPQP IHPTSSSSSG CSPPSFLQTL AQTLMSTTAH PPASLSGDSS  60
PTTSGSSSPS SSAAVAGSEE PALLGQATST STPSAAGDDA AVPSSPQMGM YFETEDDAYE  120
FYKAYAARLG FVVRKSNKSK NSRHTVTRRL FVCSKQGFRQ EPKKPQDETN ATDVTVAASP  180
PPPRCPDSRT GCLASLTIKL LPSANAFRVT EFVAEHNHPL ASAVSAVAMI PSSSSHHTIA  240
AAASLPDPRD GPRPEMHFET EDDAYAFYNR YAEHVGFSVR RSYKKRKHGV IVSRIFVCSR  300
EGVSDRAKHD GLASISANAG GGAPGPPRPG PPPTRTGCQA RMVIKITPCR TYRVAKFIAE  360
HNHPLANSET VHKLRSHKMR ARGHELGPGE LHRRKQGKGV QLGDAGAALE YLEGLQVGNP  420
SLYYAVGMAP DGNLAVNFFW ADAKSIIDFR SFGDVVCFDT TYGLNVYGRP FALFVGVDNH  480
KQLLVLGAAL LYDDGIQSLK WVFQAFDDAM RDRQPKTILI DERSECAIAA AEVWPGSNHC  540
TSVWHIYHSS KRHLKQVFES SKSFGNALSQ CLFDCEDEME FLSAWEKLIE KHDIGESEWL  600
SRLFLEKEKW ALPYRRTVFS ADILSTLRKD SMINELKREL NEQEDILLFF KRYETMLEEH  660
RSKKLQADVD GNQVTLPIPS LRMLKQSSNA YTPEAFKMFQ GEFEAYMNCM SFPCSVVGTV  720
SEYKITLDEK PSDAIVKFDA LDGLATCSCR KFESVGIQCC HVLKVLDLKN IKELPEQYIL  780
KRWRKDARSV RMGEEPNCGS SSIMRSSLDV RFSNMCRMVS LIASRAAKSE EAMSYIESQS  840
SVLLKHLDEI LQTSYPENGN HDVASSSQAI SFVGNHPDHT TQARAVADTA NGLTSLLGIS  900
AYPPVDN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179680.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020179681.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020179682.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020179683.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A453BJC7	0.0	A0A453BJC7_AEGTS; Uncharacterized protein
TrEMBL	A0A453BJC9	0.0	A0A453BJC9_AEGTS; Uncharacterized protein
STRING	Traes_2AS_1683BEFD0.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-83	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]