PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_1A307CE26.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 140aa    MW: 15738 Da    PI: 10.1021
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_1A307CE26.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP50.67.5e-16105139337
                    TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqd 37 
                             ++drhski T++g RdRR+Rls+ +a++fF+Lqd
  Traes_2AS_1A307CE26.1 105 FRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQD 139
                            689*******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-15106139IPR005333Transcription factor, TCP
PROSITE profilePS5136919.793106140IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MTQPSTVIIT IIIIEYPTKN RHYQTLLPTG RHMHPAPSSF GECFQFFPAE MYHHHQQQLL  60
LQEEGTLEAV LWQPVTAPAP AERGEPGNNG APGGAVVGAA RKRPFRTDRH SKIRTAQGVR  120
DRRMRLSVGV AREFFALQDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038682e-45AP003868.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1111_B08.
GenBankAP0149642e-45AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-45CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186977.16e-74transcription factor TCP12-like
TrEMBLA0A3B6APJ85e-74A0A3B6APJ8_WHEAT; Uncharacterized protein
STRINGTraes_2AS_1A307CE26.11e-100(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-14TCP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]