PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_239CDF865.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 105aa    MW: 11024.7 Da    PI: 10.1705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_239CDF865.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61.1e-1171102132
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg 32 
                            +g+WT+eEd+ lv +v+++G+g+W++++ + g
  Traes_2AS_239CDF865.1  71 KGPWTPEEDLVLVSYVQEHGPGNWRAVPTRTG 102
                            79************************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1362100IPR009057Homeodomain-like
SuperFamilySSF466891.15E-965101IPR009057Homeodomain-like
PROSITE profilePS5129417.09966105IPR017930Myb domain
PfamPF002492.8E-1071103IPR001005SANT/Myb domain
CDDcd001677.31E-873102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
RSSGPRHAIL LVYGAGGRPL VPAHLATAAK GDRPLRPFLP LIPFGVAEVA SGGAGKSMGR  60
PPCCDKEGVK KGPWTPEEDL VLVSYVQEHG PGNWRAVPTR TGTHP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0093121e-70BT009312.1 Triticum aestivum clone wlm1.pk0027.a5:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A287HHW54e-34A0A287HHW5_HORVV; Uncharacterized protein
STRINGTraes_2AS_239CDF865.15e-70(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-27myb domain protein 94
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]