PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AS_28B163E7C.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 355aa MW: 38898.6 Da PI: 7.8876

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AS_28B163E7C.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.7	9.5e-32	68	122	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerF +av++LGG++kAtPk+i+++m+++gLtl+h+kSHLQk+Rl Traes_2AS_28B163E7C.1 68 KPRLKWTPELHERFADAVKKLGGPDKATPKAIMRVMGIPGLTLYHLKSHLQKFRL 122 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.742	65	125	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-30	66	123	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.05E-16	67	123	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-23	68	123	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	70	120	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-24	169	215	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MCSMQAEHCQ YMTEPEQMYH QQQQQFHDHR QHMSSRPSLS PEKKFFMKGQ GGAGGGGDSG 60 LILSTDAKPR LKWTPELHER FADAVKKLGG PDKATPKAIM RVMGIPGLTL YHLKSHLQKF 120 RLSKNLQAQA NAVNAKNVYG FGTATDKACE GHGSSGDHLN RETNTSRSMH INDALQMQIE 180 VQRRLHEQIE VQRHLQLRIE AQGKYLHSVL EKAQEALGKQ HVVAGLEAAE PTQRLPELAS 240 SVRRGLLQND GSADDSCLTA SEDILSMGLS ASATRRGCGA PFETSASASR EEDEECYLFL 300 GKPEGRREVR RDGCNGGAAF GKAAELDLSI GVVAASSRRR PDGGDRLDLN GSGWN

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MCSMQAEHCQ YMTEPEQMYH QQQQQFHDHR QHMSSRPSLS PEKKFFMKGQ GGAGGGGDSG  60
LILSTDAKPR LKWTPELHER FADAVKKLGG PDKATPKAIM RVMGIPGLTL YHLKSHLQKF  120
RLSKNLQAQA NAVNAKNVYG FGTATDKACE GHGSSGDHLN RETNTSRSMH INDALQMQIE  180
VQRRLHEQIE VQRHLQLRIE AQGKYLHSVL EKAQEALGKQ HVVAGLEAAE PTQRLPELAS  240
SVRRGLLQND GSADDSCLTA SEDILSMGLS ASATRRGCGA PFETSASASR EEDEECYLFL  300
GKPEGRREVR RDGCNGGAAF GKAAELDLSI GVVAASSRRR PDGGDRLDLN GSGWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	68	124	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	68	124	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	68	124	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	68	124	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362598	0.0	AK362598.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008K07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161185.1	0.0	myb-related protein 1-like
Swissprot	Q9FK47	5e-76	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A3B6ARL3	0.0	A0A3B6ARL3_WHEAT; Uncharacterized protein
TrEMBL	A0A446KLS5	0.0	A0A446KLS5_TRITD; Uncharacterized protein
STRING	Traes_2AS_28B163E7C.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	3e-65	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]