PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_455BD2CA1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 50aa    MW: 5665.26 Da    PI: 4.3983
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_455BD2CA1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS26.86e-09233343374
                   GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            +++++gy++ ee+g+l lgWkd +L+++S+W+
  Traes_2AS_455BD2CA1.1   2 MYPWKGYTLVEEDGCLKLGWKDLSLLTASSWE 33 
                            5779***************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.1E-6233IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 50 aa     Download sequence    Send to blast
GMYPWKGYTL VEEDGCLKLG WKDLSLLTAS SWEPTEDDHA AVAEQKRHDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200232.14e-27scarecrow-like protein 23 isoform X1
RefseqXP_020200233.13e-27scarecrow-like protein 23 isoform X2
TrEMBLA0A3B6AVJ14e-27A0A3B6AVJ1_WHEAT; Uncharacterized protein
TrEMBLA0A446KTW54e-27A0A446KTW5_TRITD; Uncharacterized protein
STRINGTraes_2AS_455BD2CA1.12e-29(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5242622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.14e-15GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]