PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_4C4190DEB.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CAMTA
Protein Properties Length: 917aa    MW: 103030 Da    PI: 9.0968
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_4C4190DEB.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1166.25.3e-52251394117
                   CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                            e  +rw +++ei+a+L+n+e++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++e+
  Traes_2AS_4C4190DEB.2  25 EaASRWFRPNEIYAVLANHERFKVHAQPIDKPVSGTIVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEERVHVYYARGED 112
                            4489************************************************************************************ PP

                   CG-1  91 nptfqrrcywlLeeelekivlvhylev 117
                            np+f rrcywlL++e e+ivlvhy+++
  Traes_2AS_4C4190DEB.2 113 NPNFFRRCYWLLDKEAERIVLVHYRQT 139
                            ************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.9319145IPR005559CG-1 DNA-binding domain
SMARTSM010762.8E-6222140IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4426138IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.23E-10331418IPR014756Immunoglobulin E-set
CDDcd002042.10E-16514624No hitNo description
SuperFamilySSF484031.23E-17523630IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-18526629IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.969532636IPR020683Ankyrin repeat-containing domain
PfamPF127962.1E-8538628IPR020683Ankyrin repeat-containing domain
SMARTSM002483.6E-6565594IPR002110Ankyrin repeat
PROSITE profilePS5008811.915565597IPR002110Ankyrin repeat
SMARTSM0024870604633IPR002110Ankyrin repeat
SuperFamilySSF525406.9E-9716782IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.833716742IPR000048IQ motif, EF-hand binding site
SMARTSM000150.18731753IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.627732758IPR000048IQ motif, EF-hand binding site
PfamPF006120.0019734753IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0095754776IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.493755779IPR000048IQ motif, EF-hand binding site
PfamPF006120.0051756776IPR000048IQ motif, EF-hand binding site
SMARTSM000150.41835857IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.608837865IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
DPLLRSEIHG FITYADLNFE KLKAEAASRW FRPNEIYAVL ANHERFKVHA QPIDKPVSGT  60
IVLYDRKVVR NFRKDGHNWK KKKDGKTVQE AHEKLKIGNE ERVHVYYARG EDNPNFFRRC  120
YWLLDKEAER IVLVHYRQTS EENAIAHPST EAEAEAPTMN VIQYYTSPIS ANSASVHTEI  180
SFSPPAPEEI NSHGGSAISS DTGGSSLEEF WVHLLESSMT KDTACGASVA FSQQIKCGTK  240
DSGNDTDSTN NVHVNHAGAL EHQVDQSQYP LTSDLDSQSH QFATSLRKTP VDGDIPNDVP  300
ARENSLGLWK YLDDDSPCLG DNIVSNGKIF NITDFSPEWA CSTEHTKILV IGDYYEQYKH  360
LAGSNIYGIF GDNCVAANMV QTGVYRFMVG PHTAGRVDFY LTLDGKTPIS EVLNFEYRSV  420
PGSSLHSELK PLEDEYTKSK LQMQMRLARL LFVTNKKKIA PKLLVEGSKV SNLILASPEK  480
EWMDLWKIAG DSEGTSVHAT EDLLELVLRN RLQEWLLERV IGGHKSTGRD DLGQGPIHLC  540
SFLGYTWAIR LFSVSGFSLD FRDSSGWTAL HWAAYHGREK MVAALLSAGA NPSLVTDPTA  600
VSPGGCTPAD LAARQGYVGL AAYLAEKGLT AHFESMSLSK GTKQSPSRTK LTKVHSEKFE  660
NLTEQELCLK ESLAAYRNAA DAASNIQAAL RDRTLKLQTK AILLANPEMQ ATAIVAAMRI  720
QHAFRNYNRK KEMRAAARIQ NHFRTWKVRR NFKNMRRQAI RIQAAYRGHQ VRRQYRKVIW  780
SVGVVEKAIL RWRKKRKGLR GIANGMPAEM TVDVEAASTA EEGFFQASRQ QAEDRFNRSV  840
VRVQALFRCH RAQHEYRRMR IAHEEAKLEF SKGQQQAPAC RRTILLILLA ESGVHVDAGT  900
DHVVKANNKC YLGQRPN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754470.0AK375447.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3094H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186933.10.0calmodulin-binding transcription activator 5
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A3B6AWM50.0A0A3B6AWM5_WHEAT; Uncharacterized protein
TrEMBLA0A446KWY30.0A0A446KWY3_TRITD; Uncharacterized protein
STRINGTraes_2AS_4C4190DEB.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]