PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_5466FDAF8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 185aa    MW: 21112.3 Da    PI: 9.9047
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_5466FDAF8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.53.6e-55191491129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdee+v++yL++kv ++++++ +vi++vd++k+ePwdLp k+k +ekew+fF+++ +ky+tg+r+nrat++gyWkatgk
  Traes_2AS_5466FDAF8.1  19 LPPGFRFHPTDEEVVTHYLTRKVLRESFSC-QVIADVDLNKTEPWDLPGKAKMGEKEWFFFVHKGRKYPTGTRTNRATEKGYWKATGK 105
                            79****************************.99***************99999*********************************** PP

                    NAM  89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129
                            dke+++    +  lvg+kktLvfy+grap+g kt Wvmheyrle
  Traes_2AS_5466FDAF8.1 106 DKEIFRGkgrDAVLVGMKKTLVFYTGRAPSGGKTPWVMHEYRLE 149
                            *****984444445****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-6216172IPR003441NAC domain
PROSITE profilePS5100558.37819172IPR003441NAC domain
PfamPF023657.3E-2920148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSDVTAVMDL EVEELKLALP PGFRFHPTDE EVVTHYLTRK VLRESFSCQV IADVDLNKTE  60
PWDLPGKAKM GEKEWFFFVH KGRKYPTGTR TNRATEKGYW KATGKDKEIF RGKGRDAVLV  120
GMKKTLVFYT GRAPSGGKTP WVMHEYRLEG ELPHRLPRTA KDDWAVCRVF NKDLAAKNAP  180
QMAPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-561617717173NAC domain-containing protein 19
3swm_B3e-561617717173NAC domain-containing protein 19
3swm_C3e-561617717173NAC domain-containing protein 19
3swm_D3e-561617717173NAC domain-containing protein 19
3swp_A3e-561617717173NAC domain-containing protein 19
3swp_B3e-561617717173NAC domain-containing protein 19
3swp_C3e-561617717173NAC domain-containing protein 19
3swp_D3e-561617717173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0108300.0AJ010830.1 Triticum sp. mRNA for GRAB2 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182284.11e-130NAC domain-containing protein 92-like
SwissprotQ9FLJ21e-80NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A3B6ARL81e-135A0A3B6ARL8_WHEAT; Uncharacterized protein
STRINGTraes_2AS_5466FDAF8.11e-136(Triticum aestivum)
STRINGTRIUR3_24774-P11e-134(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.16e-83NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]