PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AS_5A6E08D4E.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 161aa MW: 16406.1 Da PI: 6.4994

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AS_5A6E08D4E.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp Cg++Fs+ L H +H Traes_2AS_5A6E08D4E.1 6 YECPGCGRVFSSYQALGGHRASH 28 99***********9999999887 PP
2	zf-C2H2	10.8	0.0016	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++F + L H r+H Traes_2AS_5A6E08D4E.1 90 FECPVCFRVFGSGQALGGHKRSH 112 89**************9999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	6.7E-12	5	30	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.04E-7	5	28	No hit	No description
PROSITE profile	PS50157	10.429	6	33	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.054	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.04E-7	85	112	No hit	No description
SMART	SM00355	0.31	90	112	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	4.7E-11	90	112	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.432	90	112	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
AKRTRYECPG CGRVFSSYQA LGGHRASHKR INTSCSAPKA APAAAPAPEP SVDTYTSFGT 60 LSPSASPDSV AIGIGAGSSK KPAAGEAEKF ECPVCFRVFG SGQALGGHKR SHIIADAAFS 120 SDGELYGSAS VSVNEEQEQG YPVAAAGSLD LNFPPAPSEE A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003840	3e-38	AP003840.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1634_B10.
GenBank	AP003915	3e-38	AP003915.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1579_C03.
GenBank	AP014963	3e-38	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182857.1	4e-95	zinc finger protein ZAT9-like
TrEMBL	A0A3B6AV94	1e-107	A0A3B6AV94_WHEAT; Uncharacterized protein
TrEMBL	A0A446KSP4	1e-107	A0A446KSP4_TRITD; Uncharacterized protein
STRING	Traes_2AS_5A6E08D4E.1	1e-112	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3861	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	4e-21	C2H2-like zinc finger protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]