PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_731C703DE.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 234aa    MW: 26371.3 Da    PI: 12.0308
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_731C703DE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg W++eEde+l + ++++G+g+W+++++  g+ R++k+c++rw +yl
  Traes_2AS_731C703DE.2 14 RGLWSPEEDEKLMNHIAKYGNGCWSSVPKIAGLERCGKSCRLRWINYL 61
                           788*******************************************97 PP
2Myb_DNA-binding52.79.5e-1767111147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg++++eE++l+++++  lG++ W+ Ia+ ++ gRt++++k++w+++
  Traes_2AS_731C703DE.2  67 RGAFSQEEEDLIIHLHSILGNK-WSQIAAQLP-GRTDNEVKNFWNSF 111
                            89********************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.248961IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-25964IPR009057Homeodomain-like
SuperFamilySSF466893.59E-3011108IPR009057Homeodomain-like
SMARTSM007173.9E-131363IPR001005SANT/Myb domain
PfamPF002494.8E-161461IPR001005SANT/Myb domain
CDDcd001671.71E-111761No hitNo description
PROSITE profilePS5129426.23962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-2665116IPR009057Homeodomain-like
SMARTSM007172.1E-1566114IPR001005SANT/Myb domain
PfamPF002494.7E-1567110IPR001005SANT/Myb domain
CDDcd001675.95E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSKRPGGTKK RLKRGLWSPE EDEKLMNHIA KYGNGCWSSV PKIAGLERCG KSCRLRWINY  60
LRPDLKRGAF SQEEEDLIIH LHSILGNKWS QIAAQLPGRT DNEVKNFWNS FIKKKLRQRG  120
IDPATHKPLA PAGXXXXXXX XXXXXRRVQR GRADTVVPRG RTAHAAAGVG GELRVQPGQH  180
GRRRRRGGRV QRRWVTVLAV GVQQQQPDGG LRRVPGCGRP ARRSHPVGVE LQHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3537850.0AK353785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002L23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154053.18e-93transcription factor MYB3-like
SwissprotQ8LPH67e-69MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A287HHL62e-92A0A287HHL6_HORVV; Uncharacterized protein
STRINGTraes_2AS_731C703DE.21e-157(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.11e-72myb domain protein 50
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]