PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_759EDDA47.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 141aa    MW: 16227.8 Da    PI: 10.406
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_759EDDA47.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.81.2e-54121411128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdee+v++yL++kv ++++++ +vi++vd++k ePw+Lp k+k +ekew+fF+++ +ky+tg+r+nratk+gyWkatgk
  Traes_2AS_759EDDA47.1  12 LPPGFRFHPTDEEVVTHYLTRKVLRESFSC-QVITDVDLNKNEPWELPGKAKMGEKEWFFFVHKGRKYPTGTRTNRATKKGYWKATGK 98 
                            79****************************.99***************99999*********************************** PP

                    NAM  89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dke+++    +  lvg+kktLvfy+grap+g kt Wvmheyrl
  Traes_2AS_759EDDA47.1  99 DKEIFRGkgrDAVLVGMKKTLVFYTGRAPSGGKTPWVMHEYRL 141
                            *****984444445***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-577141IPR003441NAC domain
PROSITE profilePS5100553.82312141IPR003441NAC domain
PfamPF023652.3E-2913141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MSDVTAVMDL ALPPGFRFHP TDEEVVTHYL TRKVLRESFS CQVITDVDLN KNEPWELPGK  60
AKMGEKEWFF FVHKGRKYPT GTRTNRATKK GYWKATGKDK EIFRGKGRDA VLVGMKKTLV  120
FYTGRAPSGG KTPWVMHEYR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-5011419145NAC domain-containing protein 19
3swm_B3e-5011419145NAC domain-containing protein 19
3swm_C3e-5011419145NAC domain-containing protein 19
3swm_D3e-5011419145NAC domain-containing protein 19
3swp_A3e-5011419145NAC domain-containing protein 19
3swp_B3e-5011419145NAC domain-containing protein 19
3swp_C3e-5011419145NAC domain-containing protein 19
3swp_D3e-5011419145NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0108300.0AJ010830.1 Triticum sp. mRNA for GRAB2 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166615.11e-94NAC domain-containing protein 92-like isoform X1
RefseqXP_020166616.11e-94NAC domain-containing protein 92-like isoform X2
SwissprotQ9FLJ21e-65NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A3B6AS671e-100A0A3B6AS67_WHEAT; Uncharacterized protein
STRINGTraes_2AS_759EDDA47.11e-101(Triticum aestivum)
STRINGTRIUR3_24111-P11e-101(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.14e-68NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]