PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_7AAACC26B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 193aa    MW: 21887 Da    PI: 9.2899
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_7AAACC26B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.13.4e-53191491129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdee+v++yL++k+ ++ +++  vi++vd++k+ePwdLp k+k +ekewyfF+++d+ky+tg+r+nrat++gyWkatgk
  Traes_2AS_7AAACC26B.1  19 LPPGFRFHPTDEEVVTHYLTPKAVNNAFSC-LVIADVDLNKTEPWDLPGKAKMGEKEWYFFVHKDRKYPTGTRTNRATEKGYWKATGK 105
                            79**************************99.78***************99999*********************************** PP

                    NAM  89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129
                            dkev++    +  lvg+kktLvfy+grap+g kt  vmheyrle
  Traes_2AS_7AAACC26B.1 106 DKEVFRGkgrDAVLVGMKKTLVFYTGRAPRGDKTPYVMHEYRLE 149
                            *****984444445****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6015172IPR003441NAC domain
PROSITE profilePS5100556.61419172IPR003441NAC domain
PfamPF023658.6E-2820148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSDVTAVMDL EVEEPRLSLP PGFRFHPTDE EVVTHYLTPK AVNNAFSCLV IADVDLNKTE  60
PWDLPGKAKM GEKEWYFFVH KDRKYPTGTR TNRATEKGYW KATGKDKEVF RGKGRDAVLV  120
GMKKTLVFYT GRAPRGDKTP YVMHEYRLEG QLPHRLPRSA RNDWAVCRVF DKDLAAKNAP  180
PQTASAAVGV MED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5481774170NO APICAL MERISTEM PROTEIN
1ut4_B2e-5481774170NO APICAL MERISTEM PROTEIN
1ut7_A2e-5481774170NO APICAL MERISTEM PROTEIN
1ut7_B2e-5481774170NO APICAL MERISTEM PROTEIN
3swm_A2e-5481777173NAC domain-containing protein 19
3swm_B2e-5481777173NAC domain-containing protein 19
3swm_C2e-5481777173NAC domain-containing protein 19
3swm_D2e-5481777173NAC domain-containing protein 19
3swp_A2e-5481777173NAC domain-containing protein 19
3swp_B2e-5481777173NAC domain-containing protein 19
3swp_C2e-5481777173NAC domain-containing protein 19
3swp_D2e-5481777173NAC domain-containing protein 19
4dul_A2e-5481774170NAC domain-containing protein 19
4dul_B2e-5481774170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3644980.0AK364498.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2025P03.
GenBankAK3646490.0AK364649.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027E04.
GenBankAK3670980.0AK367098.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2051F14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161331.11e-139NAC domain-containing protein 92-like
SwissprotQ9FLJ23e-80NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A3B6ASJ71e-141A0A3B6ASJ7_WHEAT; Uncharacterized protein
TrEMBLA0A446KLS41e-141A0A446KLS4_TRITD; Uncharacterized protein
STRINGTraes_2AS_7AAACC26B.11e-142(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-82NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]