PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_960C7E44E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 41aa    MW: 4629.22 Da    PI: 5.5219
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_960C7E44E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS21.13.4e-07338337373
                   GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                            ++++l++++  g+ ++ e++ l+l+Wk++++v++SaW
  Traes_2AS_960C7E44E.1   3 IRTMLNEHA-AGWGMKREDDDLMLTWKGHNVVFASAW 38 
                            678899998.889999********************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 41 aa     Download sequence    Send to blast
GEIRTMLNEH AAGWGMKRED DDLMLTWKGH NVVFASAWAP S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627402e-54AK362740.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165039.11e-21scarecrow-like protein 32
SwissprotQ9SN225e-14SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A3B6C3302e-20A0A3B6C330_WHEAT; Uncharacterized protein
TrEMBLA0A446KTH21e-20A0A446KTH2_TRITD; Uncharacterized protein
TrEMBLA0A446M2X22e-20A0A446M2X2_TRITD; Uncharacterized protein
TrEMBLA0A446M3341e-20A0A446M334_TRITD; Uncharacterized protein
TrEMBLM8AQZ01e-20M8AQZ0_TRIUA; Uncharacterized protein
STRINGTraes_2DS_FB1D2D1A7.15e-23(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.12e-16GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]