PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_9D9D66343.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 786aa    MW: 85868.5 Da    PI: 5.369
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_9D9D66343.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05628123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ Cgk F r  nL+ H r H
  Traes_2AS_9D9D66343.2  6 FVCEVCGKGFQRDQNLQLHRRGH 28
                           89******************988 PP
2zf-C2H215.64.7e-0585106223
                            EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             Cp Cgk++  + +Lk H +t+
  Traes_2AS_9D9D66343.2  85 ACPRCGKRYAVQADLKAHAKTC 106
                            6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.7E-7528No hitNo description
SMARTSM003550.014628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.635628IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-5628IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355854979IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-572105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.7E-779104No hitNo description
SMARTSM003559084104IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.66384112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MATNRFVCEV CGKGFQRDQN LQLHRRGHNL PWRXXXXXXX XXXXRRRVYV CPEPGCVHHS  60
PARALGDLTG IKKHFCRKHG EKRWACPRCG KRYAVQADLK AHAKTCGTRE YRCDCGTLFT  120
RRDSFVTHRA FCGALVEETG RVLAVPAPPS PRPPDLEEVE ENVDKDKEKE EENVDKHKEK  180
EDEGDKGGED ENETSAVAEV DEPQHVEAAM EEPQPQRIPS SPSPTPPSPA PQEQQPMVAV  240
VPNLDEPVVV VEPIVDIKQE EEDKRDEDVC FQEADKYDVA ELEDSNLPDN DTPMPPCFLP  300
SPSDAIGTGG SSTSCGTVSS ASNSIAPATT TSTFAGLFAS ATTSTTPQSR SLRDLIGVDP  360
TFLCLAIGTP SSLFPQTDAS NPGTFAPPPA PHISATALLQ KAAEAGASQA GTSFLKEFGL  420
ASSSSSTPSR PPQGRFIESS STQSQQPQGR FIESSSTQSR LPQDRLIDSI STQSRSPQDR  480
FIDSISTQSR SPQDRFIDSI STQSRLPQDR FIESSSTQSR LPQDRFIESS STQSRLPQDR  540
FIDSSTQFRL PQDRYINNSM PSKLSQGRFM DTSLPSQQLL PQGRFFDNSP ASNLSQGRFF  600
DNSQPSNPTQ GRFFINSPPS NLPHGRFPDY STPGRLPQGM YIDGLPQSRL PQGRYIDNSP  660
QAKLPQGGRF VDSNPQQWHQ RSNNHNQLMD MEPGPMVSGS LGLGLAYEGS NPRLPDLMMG  720
QSPLFGPKPA TLDFLGLGIG GTMGGSTASG GLPALMVGGE LDMGSAAQPP SPWEEAQRKT  780
NGRTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-2980142365Zinc finger protein JACKDAW
5b3h_F1e-2980142365Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574170.0AK357417.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052O01.
GenBankAK3621750.0AK362175.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155452.10.0protein indeterminate-domain 1-like
TrEMBLA0A3B6AVI30.0A0A3B6AVI3_WHEAT; Uncharacterized protein
STRINGTraes_2AS_9D9D66343.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.29e-79C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]